RNA id: AMCG00009152


Basic Information

Item Value
RNA id AMCG00009152
length 4787
RNA type mRNA
GC content 0.50
exon number 15
gene id AMCG00009152
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27461230 ~ 27477658 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAAGACCTACTCCCTGACGGCCCACTATGATGAGTTCCAAGAGGTCAAGTACGTCAGCAAGTACAACAGTGGCACCCTGAGCAACGGCCTGAACCTGCCCCTGCCGGGGACCAAGCAGCGCAGCGCTCGGGGGGCTGAGGCCGGGGGGCTGCCACGCTGGAGCCGGCGAGAGATCTGTCTGCTGTCGGGACTGGTGTTCGTGGCAGGGCTGTGCGTCATCCTGGGCAGCATGCTGGTGCTCAAGTACCTGTCGATGGAGGGTCACTGCCAGGAGGACTGCCAGCGCAAGAAGGCTCTGCTCAAGGCTTCCCGCTTCATCTCGGGAAACATCGACGCCACCATCGACCCCTGCACGGACTTCTACTCCTTCGCCTGCGGGGGCTGGCTGCGGCGTCACGGCATCCCTGAGGACAAGCTGAGCTATGGCATCATCACTGCCATCGGGGAGACCAATGAGGAGAAGCTGCAGCATCTTCTGCTGCAGCCTGTGAGGAGGCGGGGGCGGGACTCAGCCGAGCGCAAGGTGAAGGCCTTCTACCGCTCATGCATGGACCTGGCCGAGATCGACCGGCTGGGCGCCCGGCCTATGACCGAGGTCATCGACAGTTGCGGGGGCTGGGACCTGGcggcggggggtgggggtggcgggGGTGGCGGGGCTGGCTGGGGCACCGGCCCACGCCCTGACTTCAACGAGTTGCTCTACCGCACGCAGGGCGTCTACAGCACAGCCGTCTTCTTCTCGCTCACCGTCAACGTGGACGACAAGAACTCCTCGCGCAACGCCATCCGGATTGACCAGGAAGGACTGACGCTACCAGAGAGGACACTTTATCTGGGGGAGGATGAGGACAGTGTGAAGATCCTGGCGGCGTACAAGGCTCTGATGGAGAGGCTGCTAAGCATGCTGGGAGCACACAATGCCACGCAGAAATCCCGGGAGATCCTTCATCTGGAGACGCGGCTGGCCAACATAACTGTTTCAGAGTTTGACGAACAAAGGAAAGATATCAGCACCATGTACAACAGAATCACCCTGCGGCAGTTACAGAGGATTGCGCCCAGCCTCCATTGGAAGAGGCTGCTGGACCGCATTTTCCATGACAACTTCTCTGAGGACGAGGAGATTGTGGTGCTGGCCACAGACTACATGCAGAAGGTGTCGGAGATCATCAAGACCACCTCGAAGAGGGTCCTCCACAACTACATGCTGTGGCGGGTGGTGGCGGCGCTGAGCGAACACCTGTCCACGGCGTTCCGCAGCACTATCCACGAGTTCTCACGGGAGATCGACGGCACCGAGCGGCAGGTGGATCTCGGCCGACTCTGCCTCACGCAGGCCAATAAACACTTCGGCATGGCACTGGGGGCCCTCTTCGTCCAGGAGCACTTCTCCTCGCACAGCAAGGCCAAGGTACAGGAGCTGGTAGAGGACATTAAACACTCTCTGGATCGGCGGCTGAAGGAGCTAGACTGGATGGATGAGGAGACGAAGGAAGCAGCACGAGCCAAGCTGCGACATATGATGGTGATGACTGGATACCCAGACTTCCTTCTCAAACCTGAGGCCATAGACCAGGAGTATGGGTTCGAAGTCAATGAGAAGACTTATTTTCGCAACATCCTGAACAGCATCAAGTTCAACATCAAACTCTCAGTGAAGAAGATCCACAAAGAGGTGGACAAGACAGCGTCTCTCAACTACGGGGGGATTGGCGCCATCATTGGCCATGAGCTGACGCATGGCTACGATGATTGGGGGGGGCAGTATGACCGCTATGGTAACCTGAAGCAGTGGTGGACCGAGGAGTCGTACCGCAAATTCCAGAAGAAGGCCGAGTGCATCGTCAAACTGTACGACAACTTCACTGTGTACAACCAGAGGGTGAATGGCAGGCTGACTCTGGGGGAGAATATCGCAGACATGGGAGGCCTGAAACTCTCCTACTATGCCTATCAGAAGTGGATCAGGGAGCATGGGCCGGAACGCCCCCTCCCCGGGCTCAAGTACACCCACGAACAGCTGCTGTTTATCGCCTTCGCACAGAACTGGTGCATGAAGAGGAGATCCCAGTCCATCTACCTGCAGCTGCTGACTGACAAACACGCTCCTGAGCATTACAGGGTGATTGGCAGTGTGTCGCAGTTTGACGAGTTTGGACGGGTGTTCCACTGTCCCAAGGGCTCCCCCATGCACCCCAATCACAAGTGCTCTGTGtggtgacctctgacccctgcaCCAACCTGTAACCTGACAGGAGAAggccaccctctctctctctccgattCCTCCTGATTGTCAATTGTTTGTAATTTCATCATTCCAGGCTGGCCTTTTAAGTCCATCTGATTGGGCTTTCTCTGCAgtgttaaaccattttggttattcatcattttaaattaactccTGATTTTAATATTCGCCATCAATCTCCCGCGATTTTCTACTTGCCTGCAGTGACAGTTTTTATTGAAGCTGTCTGCTGTATTCGAGTGAACTCACAGCTCAATAGACccccttttctgttttaaaacatccTTAACAGGACTGACTTGCAAATCTCAGATATTCGCAAGACGGAGCCCTGAACACATTGCCTTTTAGAGGAATACTCCTGCTTccttttacttttatattattattcctcctatcttttttattattttgatgtggTTCCTTTTCCTAGTCAGCACCATTGTTCATTAGCATCATTAAGCTGCTTTCTGAAGGCTCCTCCTCCCATCCAGTGAGCGGTGTCTATGTGCTGGACACACTGTGGGGACAGATGGACAGGCAGGCCTCAGAGTCCTGCTAAGGTTACTGGTTCCAGAGCCCCTCAAGTCCCCGGAGAGAGGGCTCTGCTGCAGACAATCTGAGCTCCCCCCCGATGACCCAGAAATACACAGACCACAAGCTGCTACAGGCTGGAGCCGAGAGCCAGAGTGAGGAGGCAGCTGCGGAGGAGCAGGGACCGATACACCAAGAGGCAGCGAGGATTCACACCCTCATTCAGAAGCTGTGGGGTTTACCTAGACTGAGCTGGACTCATACAGGACAGAACCCTGACTTTTGAACCCCACCTGGACTGGAGTGCATTTGCCTCCTGTTGGAATGGATATTTACTGTCAATTCGGCAAAATTCAAGATTCTGGTAAGCGTTTATTATGCATGATTTATAGTAAAGAGAAGCGTAAAATAAAgtccttttatatatataatctttgcACTGCTTACAGTACCTGTGTATTACACACAAAGGGACCAACTGTTTCCCCAATGTATCAACAGCTATGATATGCAAATACATCATATTTGTATGAGAATTAGTACAGAATTTGCAAACTCTGAGCCTATTACACTTCTTAAGGAAAATCCACAGCTCCCTATATCACTCCAGagtcaatttaattttaagacCTTTTTTCTGTCcataatacataaacacacgGATTTATGTATCCAGGGCATCAGTTAAATGGCTTATGGGTTTGTTTGAGAGATTTGTATCAAATAATGCTTTAGGCACAAACTAAGGGACTGAAGATGGGGATAGGAGTGGAGTTGCTTTGCCCTGTGATCTTACCCTGAACTGAAGCACAGAAGTCTCAGATTCAAGACAGGGAATTCAAATGACTAGTTTACTCTCTCTGCGCACGTATCCGGGTAACAGAAACCTGAATGTACTTTGTATCAATCTgaggagattttttttgtatgtcacAAATTCTCTCACTCCGTGTTGTTCTGAACCACTGCGTGTGTCCGTTGCTGTCATTGCCAGTGTTTCCCAGTattaacaatttgttttttcaaatgtttaaaaaaaaaaaaaaattatgcagTATATAATGACTGTGATGCTGTCTGAAAAAATAGGGATCATACATTTATagagaattatataaaaatatttacttttgtataaaaggatcatttgtttaaaaacacaatcattgctttacattttacaggtgtatgtatacacacgtacagatatatataaataaacacacagacttATACGCTGCcacaatgtaaattaaagaCATGTACTATTCTGTGCTGAGTAGTAGATGGTCAATCTATCACATTGTGCCAGTATGACTATGTATACACAcgcataaataaaaccaatgacAACTGTGCTGTAATTACAATGACAATGCATGCCCCCTCCGATATTATAGACCTGTCCCTAGTGAAGACAGACTCCAAACACAGTGGACTGTAATGGGAACGGACTCACCCAGTCCTGGTGAAACTGGTCGTGCTGCTGACATTTTGAGAAGTACAAAATCACTACTCCCAAGTTCTCTCACTGCGGCACTTGGGATGTAGCTAGAAGGGAAAAAGCAATGCATGGAAATACAGTAATATTTCAGGCAAATGCAGTGGACTTGTgtacttaataaaaacaattgtgttaATATTGTTGGGTAGGTTTGTTTCATGATTGTTTCTAGTCCATTCAATTGTCTTTTATGAATCATAATTCATCATTGCAGTCTGCCCTTGCATGTCCAGAGGGTGGGTTAACAGGAttttaaatcaaaccaaacTGGCACACTGTTTGACTACACCCCTGAGCTTCTCTTCAGGACAGTGAGCTCCAGCACAGTGAGCTCCAGCACTGTGCTATCCTCAGTGTGGGTCCGGTTGTCTGTCCAGGCGGGTCTGTGCGTATCGGCGGGAGATTTGCGCTAGCTGCAGTTTGGTCTCCCAGCGCTGGAGTGTGGACAGCCAGGGCTCCCTGTCTATCTCTAGCTTCTGTCTCTCAGCCT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K09610 ECEL1; endothelin-converting enzyme-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68684 lncRNA upstream 38555 27420529 ~ 27422675 (+) True G54969
TU68664 lncRNA upstream 138435 27322540 ~ 27322795 (+) True G54951
TU68663 lncRNA upstream 139040 27321949 ~ 27322190 (+) True G54950
TU68662 lncRNA upstream 141259 27319768 ~ 27319971 (+) True G54949
TU68661 lncRNA upstream 144073 27313955 ~ 27317157 (+) True G54948
TU68713 lncRNA downstream 48409 27526067 ~ 27527494 (+) True G54997
TU68786 lncRNA downstream 145858 27623516 ~ 27626011 (+) True AMCG00009164
TU68950 lncRNA downstream 847701 28325359 ~ 28325659 (+) True G55184
TU68975 lncRNA downstream 901857 28379515 ~ 28380370 (+) True G55202
TU68976 lncRNA downstream 902734 28380392 ~ 28380755 (+) True G55203
AMCG00009153 mRNA upstream 44782 27403288 ~ 27416448 (+) True AMCG00009153
AMCG00009154 mRNA upstream 71928 27384768 ~ 27389302 (+) True AMCG00009154
AMCG00009150 mRNA upstream 83524 27364305 ~ 27377706 (+) True AMCG00009150
AMCG00009147 mRNA upstream 356339 27102496 ~ 27104891 (+) True AMCG00009147
AMCG00009144 mRNA upstream 373372 27077814 ~ 27087858 (+) True AMCG00009144
AMCG00009162 mRNA downstream 15743 27493401 ~ 27494525 (+) True AMCG00009162
AMCG00009164 mRNA downstream 136597 27614255 ~ 27624432 (+) False AMCG00009164
AMCG00009163 mRNA downstream 182977 27660635 ~ 27671005 (+) True AMCG00009163
AMCG00009170 mRNA downstream 210227 27687885 ~ 27696664 (+) True AMCG00009170
AMCG00009169 mRNA downstream 254897 27732555 ~ 27733810 (+) True AMCG00009169
TU68288 other upstream 1873620 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 2543367 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 2644696 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 3485324 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 6167329 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 135925 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 1288796 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 1451234 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 1625982 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 1625982 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017501 True 2940 mRNA 0.51 19 NC_007126.7 47008307 ~ 47075260 (+)