RNA id: AMCG00009147


Basic Information

Item Value
RNA id AMCG00009147
length 1529
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00009147
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27102496 ~ 27104891 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGTCCCACGCTCTGTGGATGACTTGCCCTGCAGTGTCCTACTCTCCCCATTGCCTTGGCAGTGACAGAAGCTGCTGCACTGCGCCTCTGGGAGTCTTGAGACAGCTGAAGCATGGCATCCCTGACTAACTCGTCCTCCAATTCGGCGTTTCGCTCATCGCGGTACAGCAGTTCTTTCCGGGCTGAGGGGAACAGCTCTCACGGGGACTCTATCTTCGAACCCTACCTGGAACCTGGATCCCATAGCCTTTTTACAGAGGAGGGGGCTGGGACCCCTCTGTGCCACCCCCAGTTCAGTCGGCACCCTCGAGAGTCATTCGGATACCCAGGACCCACATCGCCTGTGTCCGGGCGTCCGGCCAGCATGGGCGCGCTGCGCTCAGTGGGGGACAGCTACCAGATGTCAGCTGATGTCAGTCAGTTCGAGCCACAGGACGTGGTGGTGATGTCATACAACCAGTGCATCGTAATCCACGCTGAGAAGCTGGCAGACGACGGGACCATCATTAACACGTTCACCCATAAGTGTCAGTTTCCTGAGGACATGGACCCGCTGTCGGTCAGCTGTGCCCGGACAGACGCCGGCATGGTGGTGGTCAGTGTGAAGAGGAACACCCTGCTGAGTCCCAGTGAGCCCCCTCCACCCTCTTACCGCTCTGAGGCACGCTTTTAACCTCAGTCTGCTGGGGGAACGGTCTTTAGGACAGTTGGCCGGGGTCAGTATTTTTAAGGCTAATGCTgatgacattttcattataattgaCCAAACTTTTACTATGCTTTCCTACTGCTTAACTATGCTAATATGAACGTGAAAATAATGGACCCTCATCGCAAAATCCTCAGTTAGTCTGACCGTCTGAAACCAATCTACAGCCGGGGTTTAGATTACTGTGCTTGAGACACTATACAATTCcatattacatttgtatctgATGGGGAAGAAATACTGTCGTGGCTTAATGATCTTGACACAATATGTAATCTACTATGGCTCTTTTGTGCGAATTCCAAGCAGAGTTTCTGGCTGAAATATGACAAACTCACAGAATAGATTTTGTTTAccattattttagaaaatacacAAGGCTTCTCTTACAGTGCTGTTAAAGAGTTCAGCTGGTGTGATTTATGGTAGTGAAATAAACCCCTCTTCCTGCAGAGAGCCTGCTGTTTTTCGGAGACCTACTATATCTGGTATGCATCACTGTCAGTTAGCCTATACTCTCTCCCAGGTACAGTGcaataacactgactgactcattTGCGCCGCACTGTATTTCCCCATCATTGATCTGTTTGTACAAATTGTTCAGCAAGCCAAAATGTCAAGCATTGATGTACTAGGTCTAAATATTTGTAGATCTAGTCAATGAGCTGCATCCATATATAATTCTTCAAAGAAAATTGTTAGCGTTTCCTGTTTTGGATATCTTCGCTAGAATGTGTTGACGTATATCTGGCATGTGATCTTCTGGGCTGTACATCCTGGTTTCATgcttttacaataaatattgaaaCTGTTTCA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68641 lncRNA upstream 5723 27096537 ~ 27096773 (+) True G54928
TU68587 lncRNA upstream 118339 26982843 ~ 26984157 (+) True G54880
TU68536 lncRNA upstream 251493 26849222 ~ 26851003 (+) True G54833
TU68512 lncRNA upstream 277567 26822296 ~ 26824929 (+) True G54812
TU68500 lncRNA upstream 288004 26810651 ~ 26814492 (+) True G54806
TU68649 lncRNA downstream 5989 27110880 ~ 27117923 (+) True G54936
TU68661 lncRNA downstream 209064 27313955 ~ 27317157 (+) True G54948
TU68662 lncRNA downstream 214877 27319768 ~ 27319971 (+) True G54949
TU68663 lncRNA downstream 217058 27321949 ~ 27322190 (+) True G54950
TU68664 lncRNA downstream 217649 27322540 ~ 27322795 (+) True G54951
AMCG00009144 mRNA upstream 14638 27077814 ~ 27087858 (+) True AMCG00009144
AMCG00009146 mRNA upstream 43536 27037329 ~ 27058960 (+) True AMCG00009146
AMCG00009145 mRNA upstream 69539 26994958 ~ 27032957 (+) True AMCG00009145
AMCG00009140 mRNA upstream 120645 26969885 ~ 26981851 (+) True AMCG00009140
AMCG00009139 mRNA upstream 199224 26898609 ~ 26903272 (+) True AMCG00009139
AMCG00009150 mRNA downstream 259414 27364305 ~ 27377706 (+) True AMCG00009150
AMCG00009154 mRNA downstream 279877 27384768 ~ 27389302 (+) True AMCG00009154
AMCG00009153 mRNA downstream 298397 27403288 ~ 27416448 (+) True AMCG00009153
AMCG00009152 mRNA downstream 356339 27461230 ~ 27477658 (+) True AMCG00009152
AMCG00009162 mRNA downstream 388510 27493401 ~ 27494525 (+) True AMCG00009162
TU68288 other upstream 1514886 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 2184633 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 2285962 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 3126590 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5808595 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 508692 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 1661563 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 1824001 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 1998749 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 1998749 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile