RNA id: AMCG00009145


Basic Information

Item Value
RNA id AMCG00009145
length 5811
RNA type mRNA
GC content 0.53
exon number 33
gene id AMCG00009145
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26994958 ~ 27032957 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGGGTAGGGATCCTGTAAAGCTGCAGCAGCCACACCAGGCATTTCAGAGACCAGACATTGCTGGGGTTCTGGGTGGCAGAAGGTTTCCAAGCAGGTGCGAGGCTCCCTATGCAGCACCACATGAAATGAATAAAGCACCGCAGCCTATAGCAGGACCCCCCACTGtcccccaccccgccccctcACCCGGCCTCTCTCAGCAACAGTTTCCCCCGGGACAACCTTCCGCCCCTGTAGTCTTTGCCACCCCACCGCCACCACAAATGAACACCCCGCCCCAGCCTCGACAGCCGTACTACACTAACCGGCCTACTCTGACCAGCAATGCGCCCCGTGTCCAGCCCAGCAGCGCCCCGCGGCCTGTGACCACCACACACGTATACCCGCCTGCCTCACAGATGATGATGATCCCCCCGCAGCAGCTGCCCTTCCCCAGCTCACAGGCGCCGGCCTACTTCATCCAGTCAGGACAGTACCGATCGCCCTACGTGGCTACGACGCAGCCCTACCCCGTGCCCACAGGGACGCCCGCCTTCTACCCTGGATCCAGCCCTGCAGATTATGGTACTTATGCTGGAGCATATTACCCAGCCCAAGGTGTGCCGCAGTACCCCCCCAGCGTGCCAGCTGCGCCCGTTATGATGAACCCGGGGCAGCAAATCCCTCCGAAACGGGAGCGCAAGCAGATTAGAATACGAGACCCCAACCAGGGGGGAAAGGATATCACGGAGGAGATCATGTCAGGAGGCAGGACgacctccacccccaccccacctcagGCAAGTTATGGTCTTcctgtatttgaaataaaaaaatgttcttgCTTGGCTTCAGATGACCGACAGAAGCCGGCTGCTGCCAGTCCCGCTGTTGTTGGAACAACGACCCTGAAGCCCAGAGAGCCAGGCAAGCCTGAGGCAGCACCGCCCCCTATAGAACCCCCTGCAGCCGAGACTAAACCCGACGACACGGACACTAAGGCAGCCCCCGTGGAGGACCTGCCCGAGCCCCTGGGGGAGACCCCAGCCAACACTACTGCCCCTCTTGTGGTGGCCCCTGACAGCGTGGATGCACCCCCACTAACGAACACTGCACCCCAGGTTAACCCCCCAGCAGCAGAACACCCTGCTCCTGTGGAGATTGAGAGCAAAGAGGAggagcagcaacagcagcagcagcaggaggaggaggaggaggaggtggaggaaaTGGAGGTAGAAGAAGAATGCCAACCAGAAGTGAAAGAGGAGAGGGTAGAAGTAGAGGCCGCCCAGCCTGTTGAGATTCTGCCCCTCTCGGAAGACCCAGTGGAGGTGGTGTCTGCAACAAACGGTGTGAGCACTGCAGCACCTCCAGCCCCTGAGGAGCCCCCTGCTGCCCCTCAGAAGCCCCCCACTACCCCTCCATCTGAGCTCACTCTGGACTCCCCCATTGCTCAGCCCGAGGAGCTAAAACCGCTCCCCAATGGTCTGTCAGACCCTGGGGCTCAGGACCCTGAGGAAGTGTCCAAGGAGACTATTGAATGTGACGAGAGTCCCATTGCTGAGCCTGAGGTCATCCGGCCACAGGAAGCACCAATCATCGCGGCAATACCCACCCCTGAGCCAACCCCTCCAGCCGAGGAGAGAGAAGACACCCCTCCACCCCAGCCCAGTGCCCCTTCTGGGGAATCCTCTATGCAAGCTGCTGCTCTCTCGGTGccaaagaagaagaggaagatgaAAGATTTGAACAAGAAGGAGGCAGTAGGAGATCTCCTGGATGCCTTTAAGGAGGAGCAGGTGAAGGAGAGCCCCTCTGAGCCAGACCAGGCCCAGATTACTGCCCCTGCTCCCGAAAGCGAAGAGCCACAGCACCCTCCAGCCGAGGAGACTGATGAGACctgggaggagaaggaggacaaGCTAGATGCCGAGAACATTGAACCTGATGCTCTCAAACCTGGAGACCAGAAATACCAGTACAAAGAAGaACAATGGAAGCCCATCAACCCtgaggagaagaagaaatatGACCGGGAGTTCCTGCTGGGCTTCCAGTTCATCTGTGCCAGCATGCAGAAACCAGAGGGCCTGCCACACATTAGTGATGTTGTACTGGATAAGGCCAATAAGACCCCTCTTCGTCCCCTGGACCCCAGTCGGTTAACAGGGATGAACTGCGGCCCTGACTTCACCCCCTCTTTTGCCAATCTTGGCAGACAGCCCATGGGGGGACGTGGCCCACCCACAGGAATGGGTCCCAGGCGCTCCCAACAGGGCCAGAGGAAAGAGCCACGCAAGATTATTACCAGCATGTCGCTCACAGATGATGTACAGCTCAACAAGGCCGAGAAGGCTTGGAAGCCTGGTATGAAAAAGGCCACCAAGGATGATGACGACCCCGAGACCATCAAAACACAGGAGCTGTTCCGCAGGGTGCGCAGTATCCTGAACAAACTGACCCCACAGATGTTCCAACAGTTGATGCGCCAAGTTACTGAGCTAAGCATCGACACAGAGGAAAGACTCAAGGGTGTCATTGACCTCATCTTTGAGAAGGCCATCTCCGAACCCAACTTCTCCGTCGCATACGCCAACATGTGCCGCTGCCTTATGGGGCTCAAAGTTCCTACCACTGACAAGCCGGGCGTGACTGTGAATTTCCGCAAGCTGCTGTTGAACCGCTGCCAGAAGGAATTCGAGAAAGATAAGGATGATGATGAGGTCTTTGAGAAGAAGCAGAAAGAGCTGGATGCATCCTTggtgGTTGAGGAGAAGCAGCGTCTACGTGATGAGCTGGAGGAAGCCAAGGACCATGCCCGCCGGCGGTCGTTGGGCAACATAAAGTTCATTGGTGAGCTGTTCAAGCTGAAGATGCTGACGGAACCTATCATGCATGACTGCATTGTCAAGCTGCTGAAGAACCATGATGAGGAGTCCCTGGAGTGTCTGTGCCGACTCTTCTCCACTATCGGCAAAGACTTGGACTTCGAGAAGGCCAAGCCCCGCATGGACCAGTACTTCAACCAGATGGAGAAGATCATCAAAGAGAGGAAGACCTCCTCTCGAATCCGCTTCATGCTGCAGGACGTCTTAGACCTGAGAAGGAATAACTGGGTTCCCAGGAGAGGTGACCAGGGCCCTAAGACAATTGATCAGATCCACAAGGAAGCAGAGTTGGAGGAGCACCGTGAGCAGATCAAGGTGCAACAGCAGCTCATGAACAAGAAGGACAATCGACGTGGGGGCCCTGGGGGGCCACACCCTGCAGCCGGAGGACGCAACAGTCAGCCTCAGGATGAGGGCTGGAACACTGTCCCCATCTCCAAGAACAGACCAATTGACACCAGCAGGCTCAGTAAGATCACAAAGCCTGGAGCGATGGACTTCAATAACCAGCTGCTGGCTCCCGGGGGCAGGCTGAGCTGGGGCAAGGGCAGCAGTGGCGGCTCTGGCTCCAAGCCAGCTGAGCAGGCTCCCGAGTCTGGACGGCCCGCTACCAGTACCCTGAACCGCTTCTCCGCCTTGCAGCAGGCGTCCTCAGCTGCACCTCCCACCGTAGACGGTGATGCACGGAGAGTACCACAGAGGAGTAGCTCCAGCCGGGATCGCAGTGAGCGTAGTGACCGCTTTGAACGTCCGGAGCGTTTTGAGCGTGGTGAGCGCGATCGCTTTGAGAGGAGAGATGCTGGGGGTGAGAAAGGTCTGGACAGGAGTGACCGGAACAGGCCCCCTGTCACCAAGAGGAGCTATAGCAAAGAGACTGAAGACCGCAGCCGGGAGAGGGACCACCGTGGCCCAGCAGACCCCTTGCGCAGAGTTGCCAGCATGACTGACGACAGAGACCGGGGCAGTCGGGAGAGAGCCAGGAGCAAAGAGACAGCCACCCTGAGTGAGGATGACATGGACAAGAAGTCAAAGGCCATCATTGAGGAGTATCTCCACATCAACGACATGAAGGAAGCCCTGCAGTGTGTCCAGGAGCTGAACTCCGACCCGCTGCTCTTTGTGTTCGTCCGGAACAGCATTGAATCGACGTTGGAACGTAGCACCATTGCGCGGGAACACATGGGCCTGCTGCTCTACCAGCTGCTCAAGGCTGGCACCCTGCCCACTGATCATTACTATAAGGGGCTGCAGGAAATCCTGGAGGTGGCAGAGGACATGGCCATTGACATCCCTCACATCTGGCAGTACCTGGCAGAGATCATCGCACCCATGCTTCATGAGGGGGGCATTCCCATGAGTGAACTCTTCAAGGAGGTGTCCAAACCCCTGATTCCCCTCGGGAAAGCTGGCATCTTACTCGTGCAGATCCTGTCCATACTTTGCAATGGAATGAGCCATAAAAAAGCAGGTGCCCTGTGGAGAGATGCCGAATTAAGCTGGAAAGACTTCCTGCCGGAGGATGAAGATGTCAACAAGTTTGTCACTGAGATGAAAGTTGAATTTACTCTGGGTGATGATTCAGACAAGACGAGCAAAAAGAACTTGACTTCAGAGGAGTTGAAGAAGCAGTTAGACAAACTGATAAAGGAGAAGGCAGACAACCAAAGAATATACGACTGGGTGGAGGCCAACTTGGATGAGCAGCAGATCTCCTCCACGGTGTTCGTCAGGGCAGTGATGACGTCGGTGTGTCAGTCCGCCATCAGCTTTGAGAACCCATACAAAGTGGATGCGACGCAGATCACGATGAGAGCAAAGCTGCTGCAGAAGTACCTCACAGATGAGCAGAAGGAGCTGCAGGCCCTCTACGCTCTTCAGGCCTTGATGGTGAAGCTGGAGCAGCCAGCGAATCTCTTGCGGATGTTCTTTGACACGCTGTACGATGAAGATGTCATTAAGGAGGAGGCCTTCTACAAATGGGAGTCTAGTAAAGACCCAGCAGAGCAGCAGGGCAAGGGCGTGGCACTCAAGTCTGTCACCGCCTTCTTCACCTGGCTCCGCGAGGCTGAGGACGAGTCGGACAACAGCTAGGCGCTCTGGGGCCCCTGACGTGCGGTAGGGCCAGGGCAGcgaATGTctaacttacaaaataaaaataaaaaaaaaaaaaaaaaaagatggtcaGTTGGAGGTGCAGCTGGGACATTTCAGAAGACAGAAGTGGATGTATGAGAAGTTTTGGGATTCCTCATGCAATAGGGGCCGGGCTGAGTCGAGACtgaacattttgatttgcttgGAATCCGCCCACCTTCTCTCTGTATCTGTcagtcatctttttttttttttctcctacacTTAACATGGGGGCCTCAAAAGCCTTGAACAAGTCTGTAgtggattttaaaaaatacaaaaaaatcattattaaaaacttgaaagtATATAGAGAAATCGAgacttaattaaaaagaagcagTACAGATCCTAGAGTCATTTCTGCTGATTCAAAGTGGAAATCTATTTCAGGACagttctgtgtatatatatatatgtatgtttttgtttttgtttttctgttttttattttttattttatttccttattttatttttcaaattaaaaaatgctaatgTAATGccatgtaatgttttattttctcccctttttttttttccccttgaaaacaaaaagaaaatgggcggattttcctgtatttatatatatatttttttttctctccctcctttctccTGAGTTACCAGAAGGTGCTTGTAATTATCCACCTGAATTCATTGATtacagtttaattgaattttttgtaaatactttgctttctttattaagtatttaattaaaagattaatgCCTCTTTTCACATCaaactggaaaagaaaataaagaacattgcaaaaataaaagactATCAAGTTGCA

Function

GO: NA

KEGG:

id description
K03260 EIF4G; translation initiation factor 4G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68587 lncRNA upstream 10801 26982843 ~ 26984157 (+) True G54880
TU68536 lncRNA upstream 143955 26849222 ~ 26851003 (+) True G54833
TU68512 lncRNA upstream 170029 26822296 ~ 26824929 (+) True G54812
TU68500 lncRNA upstream 180466 26810651 ~ 26814492 (+) True G54806
TU68503 lncRNA upstream 183707 26810651 ~ 26811251 (+) False G54806
TU68641 lncRNA downstream 63580 27096537 ~ 27096773 (+) True G54928
TU68649 lncRNA downstream 77923 27110880 ~ 27117923 (+) True G54936
TU68661 lncRNA downstream 280998 27313955 ~ 27317157 (+) True G54948
TU68662 lncRNA downstream 286811 27319768 ~ 27319971 (+) True G54949
TU68663 lncRNA downstream 288992 27321949 ~ 27322190 (+) True G54950
AMCG00009140 mRNA upstream 13107 26969885 ~ 26981851 (+) True AMCG00009140
AMCG00009139 mRNA upstream 91686 26898609 ~ 26903272 (+) True AMCG00009139
AMCG00009130 mRNA upstream 158541 26830199 ~ 26836417 (+) True AMCG00009130
AMCG00009138 mRNA upstream 193109 26801474 ~ 26801849 (+) True AMCG00009138
AMCG00009129 mRNA upstream 198191 26794190 ~ 26796767 (+) False AMCG00009129
AMCG00009146 mRNA downstream 4372 27037329 ~ 27058960 (+) True AMCG00009146
AMCG00009144 mRNA downstream 44857 27077814 ~ 27087858 (+) True AMCG00009144
AMCG00009147 mRNA downstream 69539 27102496 ~ 27104891 (+) True AMCG00009147
AMCG00009150 mRNA downstream 331348 27364305 ~ 27377706 (+) True AMCG00009150
AMCG00009154 mRNA downstream 351811 27384768 ~ 27389302 (+) True AMCG00009154
TU68288 other upstream 1407348 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 2077095 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 2178424 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 3019052 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5701057 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 580626 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 1733497 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 1895935 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 2070683 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 2070683 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007984 False 6444 mRNA 0.50 34 NC_007122.7 27828830 ~ 27917730 (-)
grasscarp (Ctenopharyngodon idella) TU30648 True 4006 lncRNA 0.52 18 CI01000004 4562157 ~ 4574162 (+)