RNA id: AMCG00009140


Basic Information

Item Value
RNA id AMCG00009140
length 2697
RNA type mRNA
GC content 0.56
exon number 21
gene id AMCG00009140
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26969885 ~ 26981851 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGAGggcaaaaacaaagagaaaactCAGCCCGAAAAGactgaggagaaggagaagcagCCGGTCGGGAAGgacaaggagaagaaggaggacCAGGAGCTGTCAGAGGAAGATAAGCAGCTCCAGGATGAGCTGGAGATGCTGGTGGAGAGACTCGGTgAAGGGGACCCTGCTCTGTATCGTCCAGCCCTGGAGGAACTGCGTCGGCAGATCCGCTCCTCCACGACCTCCATGACCTCTGTGCCCAAGCCGCTCAAGTTCCTGCGGCCACATTATGGCAAGCTGAAGGACATCTACGAGGGCATGGCTGCTGGGGACAACAAGCGCTTCTGTGCTGATGTGGTGTCAGTCCTGGCTATGACCATGAGCAGTGACCGTGAGTGTCTGAAGTACCGCCTGCTGGGGTCACAGGAGGAGCTGGCGTCTTGGGGCCACGAATACGTCAGACACCTGGCAGGGGAGGTGGCGAAGGAGtggcaggaggtggaggagagCGACAAGGTGCAGCAGGAGACGCTGCTGAAGCTGGTGAAGGAGATTGTGCCCTACAACATGGGGCACAACGCAGAGCATGAGGCCTGCGACCTGCTTATGGAGATCGAACGCCTTGACATGCTGGAGCTGTACATCGATGACAACGCCTACGCCAAGGTCTGCCTCTACCTCACCAGCTGTGTGAGCTATGTCCCAGAGCCAGAGAACTCTGCGCTGCTGAAATGCGCCCTGAACATCTTCCGCAAGTTCAACCGCTACCCCGAGGCGCTGCGCCTGGCACTGATGCTGAATGACATCGAGCTGGTGGAGAACATCTTCACCTCCTGCAAAGACATTGTTATCCAGAAGCAGATGGCCTTCATGCTGGGCAGACATGGTGTCTTTCTAGAGCTGAATGAGGATGTGGAGGACTACGAGGACCTGACTGAGATCATGTCCAACGTGCAGCTCAACAGCAACTTCCTGGCACTGGCTCGAGAGttggaTATCATGGAGCCCAAAGTCCCAGATGATATCTACAAAACGCATTTAGAAAACAACCGGTTTGGTGGCAGTGGCTCCCAGGTGGACTCTGCACGAATGAACCTGGCCTCCTCCTTCGTGAATGGCTTTGTAAACGCCGCCTTTGGCCAGGACAAACTGCTGACGGATGACGGCAACAAGTGGCTGTACAAGAACAAGGACCATGGAATGCTGAGCGCAGCTGCCTCACTGGGGATGATCTTGCTCTGGGATGTTGATGGTGGGCTGACTCAGATCGACAAGTACCTGTACTCCTCTGAGGACTACATCAAGTCTGGTGCCCTGCTGGCGTGCGGTATTGTGAATTCCGGGGTGAGGAATGAGTGTGACCCTGCCTTGGCTCTGCTGTCAGACTATGTTCTCCACAACAGCAACATCATGAGGATAGGTGCCATCTTTGGACTGGGCCTGGCATACGCTGGTTCTAATCGTGAGGATGTGCTGTCTCTGCTACTGCCCGTCATGGGAGACTCCAAATCCAGTATGGAGGTGGTGGGAGTGACGGCCCTGGCTTGCGGCATGATTGCAGTGGGCTCCTGTAACGGTGATGTCACCTCCACCATCGTGCAGACCATCATGGAGAAGTCAGAGCAGGAGCTGAAGGACACCTATGCCCGCTGGCTGCCCCTGGGCCTGGGCCTTAACCACCTTGGTAAAGGGGAAGCCATTGAGACTACTTTGGCTGCCCTGCAGGTCGTGCCAGAGCCATTCCGCAGCTTTGCCAACACATTGGTGGATATATGTGCCTATGCTGGTTCAGGCAATGTGCTGAAGGTGCAGCAGCTGCTCCACATATGCAGTGAGCACTTCGACAACAAGGacaaagaggaggagaaggataAGAAAGACAAGAAAGACAAGGAGAAGAAGGATAGTGCAGCCGATATGGGTTCCCACCAGGGTGTTGCTGTACTGGGTATTGCACTGATTGCAATGGGAGAGGAGATCGGTGCAGAAATGGCCCTGCGAACATTTGGACACCTGCTGCGGTATGGGGAGCCCACACTGCGACGAGCGGTGCCGCTGGCCCTGGCGCTGATCTCTGTGTCAAACCCCCGCCTCAATATCCTGGACACACTCAGCAAGTTCTCTCACGATGCCGACCCCGAGGTCTCCTACAATTCCATCTTTGCCATGGGCATGGTGGGCAGTGGAACAAACAATGCCCGTCTAGCTGCCATGCTGAGGCAGCTGGCACAATACCATGCCAAGGATCCCAATAACCTCTTCATGGTCCGACTGGCACAGGGCCTGACTCACCTGGGCAAGGGCACCCTGACGCTCTGCCCTTACCACAGCGACCGGCAGCTCATGAGCCAGGTGGCTGTAGCCGGACTGCTCACTGTCCTTGTGTCATTCCTCGACGTCAAGAACATAATCCTGGGGAAGTCTCACTACGTGCTGTACGGACTGGTGGCAGCCATGCAGCCCCGCATGCTGGTGACCTTCGATGAAGAGCTGCGCCCTCTGCCCGTGTCTGTGAGAGTTGGACAGGCTGTGGACGTTGTTGGCCAGGCCGGAAAGCCCAAAGCCATCACGGGCTTCCAGACCCATACCACGCCTGTGCTGCTGGCCCACGGAGAGAGGGCAGAGCTTGCTACTGAAGAGTACCTGCCTGTCACGCCAATCCTGGAGGGCTTTGTCATCCTGCGCAAGAACCCCAATTACGACGCCTAG

Function

GO:

id name namespace
GO:0042176 regulation of protein catabolic process biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0000502 proteasome complex cellular_component
GO:0030234 enzyme regulator activity molecular_function

KEGG:

id description
K03028 PSMD2, RPN1; 26S proteasome regulatory subunit N1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68536 lncRNA upstream 118882 26849222 ~ 26851003 (+) True G54833
TU68512 lncRNA upstream 144956 26822296 ~ 26824929 (+) True G54812
TU68500 lncRNA upstream 155393 26810651 ~ 26814492 (+) True G54806
TU68503 lncRNA upstream 158634 26810651 ~ 26811251 (+) False G54806
TU68507 lncRNA upstream 173117 26793537 ~ 26796768 (+) True AMCG00009129
TU68587 lncRNA downstream 992 26982843 ~ 26984157 (+) True G54880
TU68641 lncRNA downstream 114686 27096537 ~ 27096773 (+) True G54928
TU68649 lncRNA downstream 129029 27110880 ~ 27117923 (+) True G54936
TU68661 lncRNA downstream 332104 27313955 ~ 27317157 (+) True G54948
TU68662 lncRNA downstream 337917 27319768 ~ 27319971 (+) True G54949
AMCG00009139 mRNA upstream 66613 26898609 ~ 26903272 (+) True AMCG00009139
AMCG00009130 mRNA upstream 133468 26830199 ~ 26836417 (+) True AMCG00009130
AMCG00009138 mRNA upstream 168036 26801474 ~ 26801849 (+) True AMCG00009138
AMCG00009129 mRNA upstream 173118 26794190 ~ 26796767 (+) False AMCG00009129
AMCG00009128 mRNA upstream 184095 26782537 ~ 26785790 (+) True AMCG00009128
AMCG00009145 mRNA downstream 13107 26994958 ~ 27032957 (+) True AMCG00009145
AMCG00009146 mRNA downstream 55478 27037329 ~ 27058960 (+) True AMCG00009146
AMCG00009144 mRNA downstream 95963 27077814 ~ 27087858 (+) True AMCG00009144
AMCG00009147 mRNA downstream 120645 27102496 ~ 27104891 (+) True AMCG00009147
AMCG00009150 mRNA downstream 382454 27364305 ~ 27377706 (+) True AMCG00009150
TU68288 other upstream 1382275 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 2052022 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 2153351 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 2993979 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5675984 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 631732 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 1784603 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 1947041 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 2121789 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 2121789 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00075710 True 2739 mRNA 0.47 13 NW_003335384.1 21 ~ 22196 (-)
grasscarp (Ctenopharyngodon idella) CI01000149_00364039_00368354.mRNA True 873 mRNA 0.52 6 CI01000149 364039 ~ 368354 (-)