RNA id: AMCG00009220


Basic Information

Item Value
RNA id AMCG00009220
length 312
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00009220
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29171323 ~ 29174731 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGAAGCTGTTCTACTCGTTTTTTAAGTCGTTGGTGGGGAAAGACGTTGTTGTGGAGCTGAAGAATGATTTAAGTATCTGCGGGACGCTCCATTCTGTTGATCAgTACCTGAACATCAAGCTCACCGACATCAGTGTGACCGATCCAGAGAAGTACCCCCACATGCTGTCGGTGAAGAACTGTTTCATCCGTGGCTCTGTCGTGCGGTATGTGCAGCTCCCGGCGGATGAAGTGGACACACAGCTGTTGCAGGATGCGGCGCGCAAGGAGGCCATGCAGCAGAAACAGTGATCCAGCtttgggaggggg

Function

GO:

id name namespace
GO:0043928 exonucleolytic catabolism of deadenylated mRNA biological_process
GO:0000244 spliceosomal tri-snRNP complex assembly biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0046540 U4/U6 x U5 tri-snRNP complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0017070 U6 snRNA binding molecular_function
GO:0019901 protein kinase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69229 lncRNA upstream 139845 29029318 ~ 29031478 (+) True G55394
TU69185 lncRNA upstream 272630 28897976 ~ 28898693 (+) True G55357
TU69110 lncRNA upstream 537991 28632355 ~ 28633332 (+) True G55308
TU69101 lncRNA upstream 541026 28627663 ~ 28630297 (+) True G55300
TU69038 lncRNA upstream 706097 28464562 ~ 28465226 (+) True G55257
TU69310 lncRNA downstream 10190 29184921 ~ 29185184 (+) True G55461
TU69312 lncRNA downstream 11963 29186694 ~ 29187955 (+) True G55463
TU69342 lncRNA downstream 283690 29458421 ~ 29458743 (+) True G55487
TU69374 lncRNA downstream 466758 29641489 ~ 29641936 (+) True G55512
TU69445 lncRNA downstream 683564 29858295 ~ 29932152 (+) False G55564
AMCG00009208 mRNA upstream 63096 29103608 ~ 29108227 (+) False AMCG00009208
AMCG00009214 mRNA upstream 69246 29075081 ~ 29102077 (+) True AMCG00009214
AMCG00009202 mRNA upstream 151431 29014392 ~ 29019892 (+) True AMCG00009202
AMCG00009207 mRNA upstream 187003 28982329 ~ 28984320 (+) False AMCG00009207
AMCG00009206 mRNA upstream 244495 28910313 ~ 28926828 (+) True AMCG00009206
AMCG00009221 mRNA downstream 134125 29308856 ~ 29309773 (+) True AMCG00009221
AMCG00009218 mRNA downstream 191907 29366638 ~ 29402226 (+) True AMCG00009218
AMCG00009219 mRNA downstream 241705 29416436 ~ 29419290 (+) True AMCG00009219
AMCG00009225 mRNA downstream 286754 29461485 ~ 29470524 (+) True AMCG00009225
AMCG00009224 mRNA downstream 309812 29484543 ~ 29487155 (+) True AMCG00009224
TU69266 other upstream 64415 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other upstream 64415 29103640 ~ 29106908 (+) False AMCG00009208
TU69199 other upstream 159555 28928892 ~ 29011768 (+) True AMCG00009207
TU69158 other upstream 393702 28766454 ~ 28777621 (+) False AMCG00009204
TU68775 other upstream 1553945 27613583 ~ 27617378 (+) False AMCG00009164
TU69455 other downstream 733180 29907911 ~ 29911564 (+) True G55573
TU69474 other downstream 820395 29995126 ~ 29995438 (+) True G55591
TU70069 other downstream 2987029 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 4826065 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 4840939 34015670 ~ 34018815 (+) True G56369

Expression Profile