RNA id: AMCG00009207


Basic Information

Item Value
RNA id AMCG00009207
length 216
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00009207
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28928892 ~ 29011768 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGGTTGCAGTTGTGGGACACAGCTGGTCAGGAGCGCTTCCGGAGTCTGATTCCTAGCTATATCCGTGACTCCACTGTAGCAGTAGTGGTGTACGACATCACAAATGTGAATTCATTCCAGCAGACTTCGAAATGGATTGACGATGTCAGAACAGAAAGAGGAAGTGATGTCATCATCATGTTAGTGGGCAACAAAACTGATCTGGCAGATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69185 lncRNA upstream 83636 28897976 ~ 28898693 (+) True G55357
TU69110 lncRNA upstream 348997 28632355 ~ 28633332 (+) True G55308
TU69101 lncRNA upstream 352032 28627663 ~ 28630297 (+) True G55300
TU69038 lncRNA upstream 517103 28464562 ~ 28465226 (+) True G55257
TU68978 lncRNA upstream 598826 28383000 ~ 28383503 (+) True G55205
TU69229 lncRNA downstream 44998 29029318 ~ 29031478 (+) True G55394
TU69310 lncRNA downstream 200601 29184921 ~ 29185184 (+) True G55461
TU69312 lncRNA downstream 202374 29186694 ~ 29187955 (+) True G55463
TU69342 lncRNA downstream 474101 29458421 ~ 29458743 (+) True G55487
TU69374 lncRNA downstream 657169 29641489 ~ 29641936 (+) True G55512
AMCG00009206 mRNA upstream 55501 28910313 ~ 28926828 (+) True AMCG00009206
AMCG00009203 mRNA upstream 89285 28867586 ~ 28893044 (+) True AMCG00009203
AMCG00009205 mRNA upstream 145917 28802969 ~ 28836412 (+) True AMCG00009205
AMCG00009204 mRNA upstream 182729 28767622 ~ 28799600 (+) True AMCG00009204
AMCG00009198 mRNA upstream 219811 28756555 ~ 28762518 (+) True AMCG00009198
AMCG00009202 mRNA downstream 30072 29014392 ~ 29019892 (+) True AMCG00009202
AMCG00009214 mRNA downstream 90761 29075081 ~ 29102077 (+) True AMCG00009214
AMCG00009208 mRNA downstream 119288 29103608 ~ 29108227 (+) False AMCG00009208
AMCG00009220 mRNA downstream 187003 29171323 ~ 29174731 (+) False AMCG00009220
AMCG00009221 mRNA downstream 324536 29308856 ~ 29309773 (+) True AMCG00009221
TU69158 other upstream 204708 28766454 ~ 28777621 (+) False AMCG00009204
TU68775 other upstream 1364951 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 3394719 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 4064466 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 4165795 24812618 ~ 24816534 (+) True AMCG00009085
TU69266 other downstream 119320 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 119320 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 188819 29173139 ~ 29174700 (+) True AMCG00009220
TU69455 other downstream 923591 29907911 ~ 29911564 (+) True G55573
TU69474 other downstream 1010806 29995126 ~ 29995438 (+) True G55591

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2433534 True 863 lncRNA 0.42 2 NC_048592.1 31668715 ~ 31669787 (-)