RNA id: TCONS_00019183


Basic Information

Item Value
RNA id TCONS_00019183
length 429
lncRNA type intronic
GC content 0.54
exon number 3
gene id XLOC_009284
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28010730 ~ 28015128 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACTTTCGCGGTGCTACACGGAGGAGTTAAATTGAGGCAGAAAAGTGGCCATCCATTCCTTGAGGTGAGCCATCAGGACGATGCGCAATTAAACCAAAAGCAACCCTCCTGTGATCCAACACATGGCAATTAACCTGCTAATACACTGCACTGTCTCCACCGCCAGCCCTGGGACAGAGGAAAACCTGAGGATTTGACAAAATACACAATTGCTGCCAGTTTAAAAACACTTGAGCGCTGGAACAGGCAGCCTGGTAATGGAATCGCAGCAGGTAAAGCAGACTTGCCCATCCGATGGCGGCGCAGGGCATCGTCCATATTACGGCACGGTTGTGTGCAGGCGTGGCACGGTTCCGGGCATCAAAGGGGGTGTGCCACCCACCCCCCGCAGTGACCCTCTgcagagacagacagacggacagatggagc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019180 lncRNA downstream 54568 27784550 ~ 27956162 (-) False XLOC_009280
TCONS_00019181 lncRNA downstream 54711 27791127 ~ 27956019 (-) False XLOC_009280
TCONS_00019179 lncRNA downstream 126053 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00019178 lncRNA downstream 126053 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00019177 lncRNA downstream 126053 27784550 ~ 27884677 (-) False XLOC_009280
TCONS_00018263 lncRNA upstream 341717 28356845 ~ 28357872 (-) True XLOC_009291
TCONS_00019184 lncRNA upstream 484918 28500046 ~ 28541766 (-) True XLOC_009294
TCONS_00019185 lncRNA upstream 579415 28594543 ~ 28596484 (-) False XLOC_009296
TCONS_00018270 lncRNA upstream 579415 28594543 ~ 28596509 (-) True XLOC_009296
TCONS_00018273 lncRNA upstream 601596 28616724 ~ 28617733 (-) False XLOC_009297
TCONS_00018244 mRNA downstream 38256 27971298 ~ 27972474 (-) True XLOC_009282
TCONS_00018242 mRNA downstream 300155 27708739 ~ 27710575 (-) True XLOC_009279
TCONS_00018241 mRNA downstream 300217 27703409 ~ 27710513 (-) False XLOC_009279
TCONS_00018235 mRNA downstream 487892 27449423 ~ 27522838 (-) False XLOC_009274
TCONS_00018246 mRNA upstream 43863 28058991 ~ 28085563 (-) False XLOC_009283
TCONS_00018247 mRNA upstream 63918 28079046 ~ 28085480 (-) True XLOC_009283
TCONS_00018248 mRNA upstream 71065 28086193 ~ 28095532 (-) False XLOC_009285
TCONS_00018249 mRNA upstream 71065 28086193 ~ 28107505 (-) False XLOC_009285
TCONS_00018250 mRNA upstream 71566 28086694 ~ 28094326 (-) False XLOC_009285
TCONS_00018243 other downstream 87637 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 356438 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018239 other downstream 364194 27646419 ~ 27646536 (-) True XLOC_009276
TCONS_00018201 other downstream 1711983 26298629 ~ 26298747 (-) True XLOC_009260
TCONS_00018200 other downstream 1735973 26274640 ~ 26274757 (-) True XLOC_009259
TCONS_00018264 other upstream 360385 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018276 other upstream 719799 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018305 other upstream 1370005 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018320 other upstream 1655064 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 1862146 29877274 ~ 29877388 (-) True XLOC_009321

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_00441183_00448301.mRNA True 1358 mRNA 0.47 4 CI01000072 440626 ~ 448472 (+)