RNA id: TCONS_00018313


Basic Information

Item Value
RNA id TCONS_00018313
length 710
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_009315
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29593547 ~ 29598679 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atagagaagaagaaaaaaaaagaacatgacTGAACTTTGCATCTTGGTTCAAACAtttaacaattgaaaaaaaaattatttaacttcCTTCTACGGGAACTAAGCTAAGATCTGTATCTAATTACAGTACATGAAACCTGTCATGCAGCATTACTTGTATGCTTTAGTAGGAATGTGTTTTTAGTAAAAGGTGTAACCAAGTAAGTATAAAGAACTATGTTCCTCTTCGTGACCAGACCAGCTTCCATCATGAAGACTCTAGTGTGTGCTCTAATTGTTGTGCTCCTCTGCAGTGCCTCAGTGCACTCGCTGACATGCTACACATGTGTGGATGGGGACTGCAAGACCCCCACTGAATGCCCAGCCTCAAGCAATTTCTGCAAGACTGTTTCAACAGCTTCTGTGTTCACCCGCACGTGTGAGGAGTTCTGTGTGCCTGGAGTGAACGTCTACTGCTGCACTTCTGATCTGTGTGACTGACCTCTCAACACCACCAGTCCTGTCCTGCCAGTCAGACACTAATGTTCATTATAATAGCATTATAGGGGGGGAAAAGTCACTTATTGGCTTTTTTTCTAATGACCCTTCTCCATCTGACTCAACATGATTTGCTTAACACTTCTTAAAAGGAATGTCTAAAAATTCTggtttctgttttatttctgtatgaTGATTTGGtttatgaatgaaataaaatctgCTCAGTAAAa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-310 No description available

Ensembl:

ensembl_id ENSDART00000155153

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018309 lncRNA downstream 38982 29555324 ~ 29556737 (-) True XLOC_009313
TCONS_00019192 lncRNA downstream 56553 29536484 ~ 29539166 (-) True XLOC_009312
TCONS_00018303 lncRNA downstream 211107 29383715 ~ 29384612 (-) False XLOC_009309
TCONS_00018298 lncRNA downstream 272853 29322220 ~ 29322866 (-) True XLOC_009307
TCONS_00018295 lncRNA downstream 433466 29156062 ~ 29162253 (-) False XLOC_009306
TCONS_00018314 lncRNA upstream 50836 29649515 ~ 29651327 (-) False XLOC_009316
TCONS_00018315 lncRNA upstream 50836 29649515 ~ 29664699 (-) False XLOC_009316
TCONS_00018316 lncRNA upstream 53343 29652022 ~ 29667209 (-) True XLOC_009317
TCONS_00018317 lncRNA upstream 65328 29664007 ~ 29665812 (-) False XLOC_009316
TCONS_00018318 lncRNA upstream 66183 29664862 ~ 29665812 (-) False XLOC_009316
TCONS_00018310 mRNA downstream 8972 29564364 ~ 29586747 (-) False XLOC_009314
TCONS_00018311 mRNA downstream 22452 29564374 ~ 29573267 (-) True XLOC_009314
TCONS_00018308 mRNA downstream 38962 29549115 ~ 29556757 (-) False XLOC_009313
TCONS_00018307 mRNA downstream 61697 29527420 ~ 29534022 (-) True XLOC_009311
TCONS_00018306 mRNA downstream 85645 29503472 ~ 29510074 (-) True XLOC_009310
TCONS_00018326 mRNA upstream 825966 30424645 ~ 30816556 (-) False XLOC_009327
TCONS_00018327 mRNA upstream 827007 30425686 ~ 30505607 (-) False XLOC_009327
TCONS_00018328 mRNA upstream 827196 30425875 ~ 30450898 (-) False XLOC_009327
TCONS_00018329 mRNA upstream 827473 30426152 ~ 30815826 (-) False XLOC_009327
TCONS_00018330 mRNA upstream 836945 30435624 ~ 30714142 (-) False XLOC_009327
TCONS_00018305 other downstream 209280 29385133 ~ 29386439 (-) True XLOC_009309
TCONS_00018276 other downstream 860678 28734927 ~ 28735041 (-) True XLOC_009299
TCONS_00018264 other downstream 1220092 28375513 ~ 28375627 (-) True XLOC_009292
TCONS_00018243 other downstream 1672626 27922978 ~ 27923093 (-) True XLOC_009281
TCONS_00018240 other downstream 1941427 27654176 ~ 27654292 (-) True XLOC_009277
TCONS_00018320 other upstream 71513 29670192 ~ 29670306 (-) True XLOC_009318
TCONS_00018322 other upstream 278595 29877274 ~ 29877388 (-) True XLOC_009321
TCONS_00018344 other upstream 1245710 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018355 other upstream 1463878 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018367 other upstream 1607759 31206438 ~ 31237395 (-) True XLOC_009339

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU349320 True 584 lncRNA 0.39 3 CI01000093 44014 ~ 45719 (-)