RNA id: TU412465


Basic Information

Item Value
RNA id TU412465
length 2203
lncRNA type intronic
GC content 0.40
exon number 2
gene id G361670
representative True

Chromosome Information

Item Value
chromosome id CI01000154
NCBI id null
chromosome length 1600967
location 967354 ~ 970074 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAACGCTCCGAAGCTTCCTGAAGCAGTATTTTGAAATCGGCCATCACTATATAAGTCGTTATTTTGTTTTTGTTTTTTGTGGGGAAAATGGGGAAAAAATTAAACCAGAAACCTAATTTCTAAAAACAGAGGCAGACAGAGAAAATGACTGTGGCGTTGTATTGGATCATCTCCAGGTTGCCATGCAGCTGTCATAATAATAGAGACAAAGACAATGGAGTAATAAAGACTGACAGCACTGTGATAAAATGTCATCTTCTGGTGAGCGGCAACCCTGAGTCCATTTGACGGAGTGTGAGCACAGTGAGAGAGAGATGAACACAGTGATGGATTGTGTGTTTGATGAGGGTCATCCTTCAGCACTGAACTGCCATCACTGCAGCTGCAGACCGGAGACACTTTCACTGCGTTACACTGAAACACATTTAATACGCTCCCTTTCGCTCGTTGCTGTGGCCACAGGCTAATGGTTGCCCTGGAGACCAGTGACTCAAACAAAACTAGATTCCCTGAANNNNNGACGAACGCGCAGTGAAGAAATGTGAAGGGCATTATGAGTCGTGTATTGTCTCGTCGTTTCATAAAGCACTCAAAGGTCATCACAGACATTGACTTCTGAGAAGTGGAGTTAACAGTAAAGTATGTTAAATGTTCGCTGTTATTCACTCACAAAGGCAGTTTCTGTGGGACTGATTATAAATGGTAGAACGCAGGGTAAATATTGGGTTAGCAACTGACCTGGCCATTCTCTGTCAACATACTTCCTGGTATCATTCTGCTCAGTTTATCTCTACAGGTTATAAATATTTGTGCTCATAATTGTTGTTAACTTGCTCAATTCTGAAACCACTTTCCTTTTCATTCGACTAAGCTGCACATGCTATTGGTTAATGTTCAAGCATTGTTTTAGGCTACTATTGGTGCTCGGCTCGGTTCGGCTTGCTTTACTTTCGGTTTGCTTTTCCATTGCAGTACCGCTTCAAAGTGGGTGGGATTATAGACTGATACGCCGCCTTTACTGTCATGGATCCGCTCCTTGTCTACTAACGAGTCTGTCTGTCCTCGTTTACTGACCATGATACAGCCATTTCTTTTTTCAAGTTGCGTGCGACGGTTGTTTAAAGTAAGTTGTTTCAAATAAGATGAACAAATGATACTGCGGTGGCTGTTACTGACTATTTAAATCTAGTAGGTTCGGTGTCTTGTGTTTCAAATCCAATGACGCTGGTAGTGACGATTCTCTCTGACCAATCAGTGATCTGCAGTGTTCACACGTCACATTTAGTATTGGTATGGCACGCTTGGAACCTCAACCGAGGTGGTACTATTTAAGCAAGCTGTACCGTTCTGTACCGAGCTGTCCCATGCAGTGGAAAAGCGACAAAAAGTGAGCCGAACCAAGCCTTACCGAACAGTACCATGGAGTGGAAAAGCATCATAAATTAGGTAATAGTTAATTTCTGAAATGTTGCCAGTGGTTATCAGTAACTTAATGCCTGGCAATGTAATAGGGATTATGGCAATAATAGCAAATAACAACAGGTTTGAAAGCATGAATACTCACCAAGACCGGCATTTTGACATTATTTGTCTTTAATTGACTGTTTAAGTGCAATAAGCAGTGAAAAAGAACTTAGTTCTGAGAGGCGGCTTTATGCGCACGCTCTTGTGTAAGCACAAAATCTGTGGGAATGAGTAAAATTATGTGCAATATGCACAATCCCATGCCGAAATTCAAGCCCTGTAACACTAACAATATTCATCCAGAGCAAATGAATCAAGTGAGTGAGGGAAGGCGGGTATTTTGACAATGCTACATTGCACTTTGTTTATTATTTCAGATGCCTTTTTATAAGACTACAATTGAAAAATGTAGCCTATATATTGTATATAAAATTCAACCCACCAAAGTGGCTAGTAGGAGTGACTGCATTACACATCACTGTGAAATTTACAAGCTGGAAATTATACAGCTGTTAAGTAGTTCCTCAACACATTTTTTTATTGATGCTTTTAAGACTAATTTTTGTGACTTGTGATATATTTGTTGGTTGGCTATCTTTGTTGCAAATCAGCAGAATTTGCAACAGCAGTGCTGAATAACTTGAATTAAGTAACAAATTATTAAATAATATGAATCATACAACTACTGTAAGTAAATCCAACCTACCTTACCCAGATATATACAGTACACTCANNNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412489 lncRNA upstream 104437 862679 ~ 862917 (+) True G361694
TU412412 lncRNA upstream 120112 846718 ~ 847242 (+) True G361631
TU412409 lncRNA upstream 130752 836345 ~ 836602 (+) True G361628
TU412408 lncRNA upstream 132991 834103 ~ 834363 (+) True G361627
TU412385 lncRNA upstream 169577 794129 ~ 797777 (+) True G361605
TU412423 lncRNA downstream 11719 981793 ~ 991232 (+) True G361637
TU412522 lncRNA downstream 23313 993387 ~ 993598 (+) True G361726
TU412524 lncRNA downstream 24898 994972 ~ 995197 (+) True G361728
TU412525 lncRNA downstream 25780 995854 ~ 996076 (+) True G361729
TU412531 lncRNA downstream 129967 1100041 ~ 1100269 (+) True G361735
CI01000154_00902311_00907798.mRNA mRNA upstream 59359 902054 ~ 907995 (+) True CI01000154_00902311_00907798
CI01000154_00887422_00890641.mRNA mRNA upstream 76411 887422 ~ 890943 (+) True CI01000154_00887422_00890641
CI01000154_00776484_00783606.mRNA mRNA upstream 183672 776484 ~ 783682 (+) True CI01000154_00776484_00783606
CI01000154_00753231_00755134.mRNA mRNA upstream 212220 751150 ~ 755134 (+) True CI01000154_00753231_00755134
CI01000154_00709450_00737541.mRNA mRNA upstream 229110 708287 ~ 738244 (+) True CI01000154_00709450_00737541
CI01000154_01001933_01010068.mRNA mRNA downstream 31820 1001894 ~ 1010582 (+) True CI01000154_01001933_01010068
CI01000154_01057020_01083988.mRNA mRNA downstream 86710 1056784 ~ 1086056 (+) True CI01000154_01057020_01083988
CI01000154_01134763_01169402.mRNA mRNA downstream 164689 1134763 ~ 1169416 (+) True CI01000154_01134763_01169402
CI01000154_01186882_01191062.mRNA mRNA downstream 216808 1186882 ~ 1191062 (+) True CI01000154_01186882_01191062
CI01000154_01191290_01198704.mRNA mRNA downstream 221216 1191290 ~ 1198707 (+) True CI01000154_01191290_01198704
TU412560 other downstream 287297 1263347 ~ 1263886 (+) False G361764
TU412561 other downstream 287297 1263347 ~ 1263886 (+) True G361764

Expression Profile