RNA id: TCONS_00018426


Basic Information

Item Value
RNA id TCONS_00018426
length 857
lncRNA type antisense
GC content 0.46
exon number 5
gene id XLOC_009376
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 33868661 ~ 33887667 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTATGGTCAACTTGTTTCAATATGGCGGCGGCATCTTCATGATCGCTGGCCAGTCATATTCAGCGCGAGTATTACAACGCACTTCACGGCTTAAAAGCAGTTTGTGTCGTCTGAAGAAGGTACTGCAATAGTTAGTGGGATCATCCAGTGTTGGCCACTGTATGAGGGGTAACGGCACACCACTGCTGATGCACATGCAGGACAGTTCATCACCCCACATCACACAGCGGGAGCTATTCAGGATTTCAGGAGCATCTGATAAAACACCACAGTTCTTTCAGGCTCAATCCCCTCCCAGAACATGCCCATTTTGGGGTTCAGGCAAGTCCCTGGAGCTCTGCAAGATATCTCTGCCTTTTCTCCAGCTGTGAGCAGTGGGACTTCAATTGTTGGCTTCTCGTTGGTGGTCTTGTGGCTGTTCAAACCCATTTCACCACGAGTATCTACACTACACAAGAAATCAGATCCAGTCCTATAGACTTCCTGAATTTCCtgaagaaatgccaactgacccagccgaggatcgaaccagcgaccttcttgctatgagTGACTAATGCTATTGACAACTGTTGCTATAAGGGACATTTGTTCCTAACAATGTAAATCTTTACCTCTGAACATGGTTAGTGAGCTCTTTGATCTGTGCCAGCAGTTGGATTTGAGGCGGATCGTGGCAGAGCTCAACGTTGGGTCTTTGACTGCGTGTGGACAgtcgagtttgagccactttcaGAGGAGCTTCTTTTTCTGCGACAGCCAATCGTAGAGCATCCTGATTCTTCTCTTGATTTGCGATCTCAGCCAGCAGCTATGAATGAGAATGTAATaagatagataaaaaataaaataaaaat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000164029

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018834 lncRNA downstream 193527 33665924 ~ 33681678 (-) True XLOC_009371
TCONS_00018411 lncRNA downstream 628441 33244970 ~ 33246764 (-) False XLOC_009368
TCONS_00018410 lncRNA downstream 631604 33234478 ~ 33243601 (-) False XLOC_009368
TCONS_00019207 lncRNA downstream 1057210 32813736 ~ 32817995 (-) False XLOC_009367
TCONS_00018440 lncRNA upstream 70563 33957926 ~ 33964911 (-) True XLOC_009379
TCONS_00018835 lncRNA upstream 581020 34468383 ~ 34478448 (-) True XLOC_009385
TCONS_00018836 lncRNA upstream 715159 34602522 ~ 34607406 (-) True XLOC_009389
TCONS_00019211 lncRNA upstream 771518 34658881 ~ 34668392 (-) True XLOC_009390
TCONS_00018496 lncRNA upstream 1527103 35414466 ~ 35661368 (-) False XLOC_009404
TCONS_00018424 mRNA downstream 40628 33825750 ~ 33834577 (-) True XLOC_009375
TCONS_00018423 mRNA downstream 56333 33809864 ~ 33818872 (-) True XLOC_009374
TCONS_00018422 mRNA downstream 67447 33744549 ~ 33807758 (-) True XLOC_009373
TCONS_00018420 mRNA downstream 141093 33704751 ~ 33734112 (-) False XLOC_009372
TCONS_00018419 mRNA downstream 141100 33702918 ~ 33734105 (-) False XLOC_009372
TCONS_00018428 mRNA upstream 4445 33891808 ~ 33896159 (-) False XLOC_009378
TCONS_00018430 mRNA upstream 4445 33891808 ~ 33904831 (-) False XLOC_009378
TCONS_00018429 mRNA upstream 4445 33891808 ~ 33904831 (-) False XLOC_009378
TCONS_00018431 mRNA upstream 4445 33891808 ~ 33933790 (-) False XLOC_009378
TCONS_00018433 mRNA upstream 4633 33891996 ~ 33925851 (-) False XLOC_009378
TCONS_00018421 other downstream 141099 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018418 other downstream 212033 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018399 other downstream 1811796 32063292 ~ 32063409 (-) True XLOC_009362
TCONS_00018396 other downstream 2327353 31547734 ~ 31547852 (-) True XLOC_009360
TCONS_00018378 other downstream 2513064 31361787 ~ 31362141 (-) True XLOC_009348
TCONS_00018452 other upstream 392058 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018481 other upstream 1207842 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018488 other upstream 1279932 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018513 other upstream 2642102 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018517 other upstream 2986888 36874251 ~ 36874366 (-) True XLOC_009420

Expression Profile

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