RNA id: TCONS_00001501


Basic Information

Item Value
RNA id TCONS_00001501
length 608
lncRNA type read_through
GC content 0.44
exon number 3
gene id XLOC_000939
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1870861 ~ 1928225 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCCTTTGTTCTTCTTCATTTTAGACCGCATTAACGTGATGATGTGACGAATGCTGTGACAACTGATGTTACTTTCACTCCGATTGTTCCGCCTCCTAGCACCAGCAGCATTATATGGAAGCACAGAAACAATGCTGGAGTTGTTGTGAAAGTCATTGAATGGGACCAGGATGATGGCAGAACTGAAATTCCCAACCACAACTTCAGAGCCCACGCTAGtctgaacaaacacactggaGAGCTCACTCTGACAAATTTACAGCTCAAACACACTGGCGTTTACACTATTGACATCAACAGTAAAGAGCAGAGAAAGCACTTCCGCCTGACTGTTATGGATCGTGTCAGCAAACCTGATATAAAAACAAACTGTGATCTGGAAAACATTCCTGTCTGTTCTCTGAATTGTGAGGGCGAAGCTTCCTCTAAGAGTACAGTAATCTGGCAGAACTCAGCCGGACAGACGCTAAACAGCAGAGATCCTAATATGAGGACCATCAAAGTGACCAACAGCAGTAACCCTGAGGAGTTTTACACCTGTACACTGAAAAACGCAGTCAGCATGGAGACCAGTGATCCAGTCTATGAGAAGAAGCTGTTTTATGGTA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003296 lncRNA downstream 153607 1731517 ~ 1736564 (-) True XLOC_000938
TCONS_00003294 lncRNA downstream 306965 1555296 ~ 1583206 (-) False XLOC_000936
TCONS_00003295 lncRNA downstream 306965 1579918 ~ 1583206 (-) True XLOC_000936
TCONS_00002900 lncRNA downstream 311920 1572981 ~ 1578251 (-) False XLOC_000936
TCONS_00002898 lncRNA downstream 390778 1491941 ~ 1499393 (-) True XLOC_000935
TCONS_00003297 lncRNA upstream 102259 2000666 ~ 2005206 (-) False XLOC_000940
TCONS_00003298 lncRNA upstream 102259 2000666 ~ 2005508 (-) False XLOC_000940
TCONS_00003299 lncRNA upstream 102259 2000666 ~ 2005512 (-) False XLOC_000940
TCONS_00003300 lncRNA upstream 102259 2000666 ~ 2005522 (-) False XLOC_000940
TCONS_00003301 lncRNA upstream 102259 2000666 ~ 2005535 (-) True XLOC_000940
TCONS_00001494 mRNA downstream 4577 1874427 ~ 1885594 (-) False XLOC_000939
TCONS_00001495 mRNA downstream 4655 1875070 ~ 1885516 (-) False XLOC_000939
TCONS_00001491 mRNA downstream 258772 1619153 ~ 1631399 (-) True XLOC_000937
TCONS_00001490 mRNA downstream 262684 1618994 ~ 1627487 (-) False XLOC_000937
TCONS_00001489 mRNA downstream 487868 1362932 ~ 1402303 (-) True XLOC_000934
TCONS_00001502 mRNA upstream 149640 2048047 ~ 2051599 (-) True XLOC_000941
TCONS_00001503 mRNA upstream 162023 2060430 ~ 2061419 (-) True XLOC_000942
TCONS_00001504 mRNA upstream 176106 2074513 ~ 2075529 (-) True XLOC_000943
TCONS_00001505 mRNA upstream 433230 2331637 ~ 2334254 (-) True XLOC_000946
TCONS_00001506 mRNA upstream 548589 2446996 ~ 2449395 (-) False XLOC_000947
TCONS_00001493 other downstream 4571 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001492 other downstream 15053 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001486 other downstream 574418 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001485 other downstream 839114 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001476 other downstream 1265091 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001513 other upstream 1398960 3297367 ~ 3297451 (-) False XLOC_000952
TCONS_00001514 other upstream 1399077 3297484 ~ 3297570 (-) False XLOC_000952
TCONS_00001515 other upstream 1399196 3297603 ~ 3297755 (-) False XLOC_000952
TCONS_00001516 other upstream 1399441 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001517 other upstream 1399599 3298006 ~ 3298088 (-) False XLOC_000952

Expression Profile

//