RNA id: TCONS_00003295


Basic Information

Item Value
RNA id TCONS_00003295
length 284
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id XLOC_000936
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1555296 ~ 1583206 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTATCACAGCATCCGCAAACAGCTAGAAAATTTACTGTTAACAGCTCGACGATCGACACAGTTGTCCCGGCTCCTGAATTTCTCCGAGTTGGCACAGAGGATGGGGTCCGGCATTGACAGATGGGTCGGTCAGGGCAGAAGTGATGCATTTTGGGTGAGGAAAGGGGATAGTTttcagcttgaagggcatctgtgctggataagttggcggttcattccgctgtggccactccggattaataaagggactaagccgaaaatgaatgaatgaatgaattttat

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0004180 carboxypeptidase activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002900 lncRNA downstream 1667 1572981 ~ 1578251 (-) False XLOC_000936
TCONS_00002899 lncRNA downstream 80525 1491941 ~ 1499393 (-) False XLOC_000935
TCONS_00002898 lncRNA downstream 80525 1491941 ~ 1499393 (-) True XLOC_000935
TCONS_00001488 lncRNA downstream 226921 1350111 ~ 1352997 (-) False XLOC_000933
TCONS_00001487 lncRNA downstream 226921 1350111 ~ 1352997 (-) True XLOC_000933
TCONS_00003296 lncRNA upstream 148311 1731517 ~ 1736564 (-) True XLOC_000938
TCONS_00001496 lncRNA upstream 293985 1877191 ~ 1928225 (-) False XLOC_000939
TCONS_00001498 lncRNA upstream 304414 1887620 ~ 1928225 (-) False XLOC_000939
TCONS_00001501 lncRNA upstream 306965 1890171 ~ 1898407 (-) True XLOC_000939
TCONS_00003297 lncRNA upstream 417460 2000666 ~ 2005206 (-) False XLOC_000940
TCONS_00001489 mRNA downstream 177615 1362932 ~ 1402303 (-) True XLOC_000934
TCONS_00001483 mRNA downstream 580362 960209 ~ 999556 (-) False XLOC_000928
TCONS_00001484 mRNA downstream 580362 973467 ~ 999556 (-) True XLOC_000928
TCONS_00001482 mRNA downstream 865292 691738 ~ 714626 (-) True XLOC_000926
TCONS_00001481 mRNA downstream 898802 673163 ~ 681116 (-) True XLOC_000925
TCONS_00001490 mRNA upstream 35788 1618994 ~ 1627487 (-) False XLOC_000937
TCONS_00001491 mRNA upstream 35947 1619153 ~ 1631399 (-) True XLOC_000937
TCONS_00001494 mRNA upstream 291221 1874427 ~ 1885594 (-) False XLOC_000939
TCONS_00001495 mRNA upstream 291864 1875070 ~ 1885516 (-) False XLOC_000939
TCONS_00001499 mRNA upstream 305335 1888541 ~ 1894722 (-) False XLOC_000939
TCONS_00001486 other downstream 264165 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001485 other downstream 528861 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001476 other downstream 954838 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001460 other downstream 1107993 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 1426072 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001492 other upstream 287655 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 290802 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001497 other upstream 301154 1884360 ~ 1928111 (-) False XLOC_000939
TCONS_00001500 other upstream 306965 1890171 ~ 1894005 (-) False XLOC_000939
TCONS_00001513 other upstream 1714161 3297367 ~ 3297451 (-) False XLOC_000952