RNA id: TCONS_00001487


Basic Information

Item Value
RNA id TCONS_00001487
length 936
lncRNA type lincRNA
GC content 0.56
exon number 3
gene id XLOC_000933
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1350111 ~ 1352997 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGCTTCTCTACGCCAGCGCTTTTATCAGCGTCATCACGCAACGAGCTGACGCAGATCCTCTCCGCGCGAAATTTTGAGAGTTCCGTTGAGAACAAAACAAGAGCGCGAAGCAGCAGCTGCAGCAGCACCGCGCGCCGGTTCCGCTTCACAGCCGTAAAACTACCAACTGCATCACGATGGCGGAGCTCGGCTGCTACTCTCCCAGCTTCAAGAAACCGTCCGAGGTGCTGCGCATGCGGAGGCAGCGGGCGCGGAGTGAAGGACCAGGCGGGAAAGTGTCGAGTCCAGCGCTATCCGGGCTCCGGCCGTTTTCCCCGGGGCCGCTGCTCACCGCTCCGGGACGCGGTAACGGCGGAGTCAAGCGGAGAAACCCGTTCGCTAGCATCGAGAACACCTACAGCAGCCCGAAGAAGAGGGCTTTAATACAGGAGGATGGTAGAAAGAGCTCAGCCGCGGGTCCAGACGAGAAACTCCGAGAAGAACCGAAAACCGGAGCTTTACTGCGGGAGGAGCTGCTGCACACTGACCGACTCAAACAACAGCACACACAGGCAGCGGTGTCTCTCTCTGAAGCTGACGGTGTGTTTGAGGATGATCTGTTTGATCCGCAGAGCTCCGCTGCGGTGCTGAAGAGTCCAGAGGCACTCCGTGACTCTTCTCCGTCTGAGGTGTGTGTGGAGTATCCGGCTGACTGGTCTCTGAAAACGCGTCTGCTGTTCACGTCTCCTCAGTCGTTCTCCTGGGCTGAGCATCTGAAGGCGCAGGAGGAGGCGCAGGGCTTGAGTTCTCACTGCAGAGCCCAGTTCAGCAACATTCCTGCTCACATACcggtatatatatacacacacacacacacacacacacacaaaatatatacacacacacacacaatatatatatatatatacacacacacacacacacacacaaaata

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0000793 condensed chromosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194139

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003293 lncRNA downstream 34358 1291175 ~ 1315753 (-) False XLOC_000932
TCONS_00003292 lncRNA downstream 35142 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00003291 lncRNA downstream 35142 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00002897 lncRNA downstream 96917 1143962 ~ 1253194 (-) True XLOC_000931
TCONS_00003290 lncRNA downstream 335245 1005937 ~ 1014866 (-) True XLOC_000929
TCONS_00002899 lncRNA upstream 138944 1491941 ~ 1499393 (-) False XLOC_000935
TCONS_00002898 lncRNA upstream 138944 1491941 ~ 1499393 (-) True XLOC_000935
TCONS_00003294 lncRNA upstream 202299 1555296 ~ 1583206 (-) False XLOC_000936
TCONS_00002900 lncRNA upstream 219984 1572981 ~ 1578251 (-) False XLOC_000936
TCONS_00003295 lncRNA upstream 226921 1579918 ~ 1583206 (-) True XLOC_000936
TCONS_00001483 mRNA downstream 350555 960209 ~ 999556 (-) False XLOC_000928
TCONS_00001484 mRNA downstream 350555 973467 ~ 999556 (-) True XLOC_000928
TCONS_00001482 mRNA downstream 635485 691738 ~ 714626 (-) True XLOC_000926
TCONS_00001481 mRNA downstream 668995 673163 ~ 681116 (-) True XLOC_000925
TCONS_00001480 mRNA downstream 680394 658405 ~ 669717 (-) True XLOC_000924
TCONS_00001489 mRNA upstream 9935 1362932 ~ 1402303 (-) True XLOC_000934
TCONS_00001490 mRNA upstream 265997 1618994 ~ 1627487 (-) False XLOC_000937
TCONS_00001491 mRNA upstream 266156 1619153 ~ 1631399 (-) True XLOC_000937
TCONS_00001494 mRNA upstream 521430 1874427 ~ 1885594 (-) False XLOC_000939
TCONS_00001495 mRNA upstream 522073 1875070 ~ 1885516 (-) False XLOC_000939
TCONS_00001486 other downstream 34358 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001485 other downstream 299054 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001476 other downstream 725031 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001460 other downstream 878186 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 1196265 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001492 other upstream 517864 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 521011 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001497 other upstream 531363 1884360 ~ 1928111 (-) False XLOC_000939
TCONS_00001500 other upstream 537174 1890171 ~ 1894005 (-) False XLOC_000939
TCONS_00001513 other upstream 1944370 3297367 ~ 3297451 (-) False XLOC_000952

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_04892566_04900169.mRNA True 4240 mRNA 0.41 9 CI01000299 4890391 ~ 4900536 (+)