XLOC_000925 (adamts1)


Basic Information

Item Value
gene id XLOC_000925
gene name adamts1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 673163 ~ 681116 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001481
CTTTTGGCTGGGTTTGCCCTGTGCGTAAACGCGGCGCAGAGCGCGTGGGAGGAGAGCTTCGTGCTGCCGGTGCGTCTGGACACACAACCGGGACACACGAAGCAATCCCGGGAGGAGGACTCTGAGAAACGCATCTATCGCTTGGATGTCTTTGGAAAGCGGATGGTGTTGGCGTTGGAACCGGACCAGACCTTTCTGGCGCCTGGGTTTGTGTTCCAGATGGTGGGGAAACCGGAGACCGGTGAGTTTGACAGCGCTGGAGAGGCGCGATGCTTCTTCTCGGGAACCGTAAACGGAGATGAACTTTCCTCCGCGGCGATTAATCTGTGCAAAGGACTGCACGGAGGCTTCTCTGTCGGCGGGGAAGAGTACTTCATCCAGCCTGAGAACTCCACCGGAGCAGCTACAGACCGAGACACCCACACCATTCGCCGCAGGACACCGGGGATCCTGGCCGAGGAGAGCGGCTCCAAGTGCGGCGTGAATGAGGAGGAGGAGCGGGTCACCGAGAAACCCCACACAACCCATTCCAAACCATCCGAGTCTAAAGCACACCACCGATCTCGGCGCTTTGTGTCCACGCCTCGATATCTGGAGATCATGATTGTGGCAGACCAGTCAATGGCGGAGTTTCATGGCGCTCAACTCAAACCTTATCTGCTGACCATCATGGCGGTGGCCTCTCGCCTGTATCGACATCCTACCATCCATAATTCCATTACTCTGGCAGTCGTGAAGCTACTTGTTGTGCATGATGAAGAACACGGCCCTCATGTGTCCACCAATGCAGCGCTGACCCTCAGGAGCTTCTGCCAATGGCAAAAACAGCACAACCAACCCAGCGACCGTCACCCAGAACACTACGACACCGCAGTACTGTTCACTAGAAAGGATCTTTGTGGAGCTCACTCCTGTGACACCCTGGGGATGGCAGATGTTGGCACCGCGTGCGATCCAGACCGAAGCTGCTCCATTATTGAAGACGACGGTCTTCAGGCTGCCTTCACAGTTGCACATGAGCTTGGTCACGTGTTTAACATGCCCCATGATGATGCCAAGCAATGTGCCAGTGTTAACGGGGACCAATGGGGTGCCCACATGATGGCTTCAACATTGTCAAATCTAAACCAGTTAGACCCCTGGTCCCCTTGCAGTGCTCTTATGGTCACATCATTCTTGGACAATGGCCATGGTCAGTGTTTACTGGACAAGCCCCAAAAGCCTGAGGAGTTGCCCCAAACTCTGCCAGGATCGGTTTACGATGCTGATAGACAATGCCGTCTTACATTCGGAGAGGAGTCCCAGCACTGTCCTGACCTGAGCTCCACCTGTGCCGCCCTTTGGTGCACTGTCACCTCTGCAAATGGCTTGTTGGTTTGCCAAACCAAGAACTTTCCTTGGGCTGATGGGACGCCTTGTGGGTCTAACAGCTACTGTATGGCAGGCCAGTGTTTGAGCAAGACTGAGGCTGCCAAATATGAGACTCCCGTCAATGGTGGATGGGGATCGTGGGGATCTTGGGGAGACTGCTCACGTACCTGTGGAGGAGGCGTGCAATACTCTTTTAGGGACTGTGTCAATCCCCGACCCAAAAATGGAGGCAAATACTGCGAGGGCAAGAGAATTCAGTACCGCTCCTGCAACACAGAGACCTGCCCTGATAGCAATGGTTTGACCTTCCGTGAGGAGCAGTGTTTGGCACACAATGACCTCTCCTCTCAGGTGTCACTGGGCTCGGGTGAGGGTGTTGAGTGGGTGCCGAAGTACGCCGGAGTCTCTCCTAAGGATCGCTGCAAGTTGGTGTGCCGAGCGAAGGGAACGGGCTACTTCTTCATTCTGAAACCAAAGGTGGCTGATGGGACACCGTGCACTCCAGATTCCACTTCAGTCTGTGTCCAAGGACAGTGTGTGAAGGCTGGATGCGACAGGGTCATCGGATCCGACAAACGATTCGACAAATGTGGCATCTGTGGAGGAGATGGATCAACTTGCAAGAAAGTTTCCGGATCAATGGAACGTGCTAGACCGGGCTACCAAGATGTGGTGACGATTCCAGCTGGTGCCACACACCTAGATGTCAAGCAGCGATCTTTTGGAGGCCGTAGCCAAGACAACAGCTACCTAGCAGTCCGCCGGCAAGATGGCTCCTACCTTCTGAACGGCGACTATAAGTTGACCACTTTAGAGACTGATATCTCTGTGAAAGGTGCTCTGCTGCGGTACAGCGGCTCCTCTGTTCTTCTGGAGCGCCTGAGAAGCTTTGCTCCCTTACCTGAGCCTTTGACCATCCAGGTGTTGTCAGTCGGTGAATCCCCTAGGCCTCGTGTCAAGTATAGCTACTTTGCTCCACGTCCCAATGGCTCAAACCGGCCGTCTATCAACGCAATTAGTAAAGCTGTAGATGCTGAATGGTTCCTGGGTGAGTGGGGAACTTGTTCGAAAACCTGCGGCGGAGGGATTCAGACGCGGGATGTTATGTGCCTTGATTCTAAACGTCGTCCATCTAAAAACTGTGTTGATGAGTTGCGCCCTGCATCATCTCGGCAATGTGCTTTGCAGGATTGCCCATTCTGGTTCTTGGGTGAGTGGGGAACTTGCTCGAAAACCTGCGGCGGCTTTCGCAAGCGTACACTTAGCTGCATTACACATGATGGTCACATTTTGCCTAATAGCAGCTGCAATGCAACGGATCGACCACGACCTCTTCTGAACTTGTGCAATCTGACTCCCTGTTGA

Function

symbol description
adamts1 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in oocyte stage III; ovarian follicle stage I; ovarian follicle stage II; ovarian follicle stage III; and ovarian follicle stage IV. Orthologous to human ADAMTS1 (ADAM metallopeptidase with thrombospondin type 1 motif 1).

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-070814-1 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in oocyte stage III; ovarian follicle stage I; ovarian follicle stage II; ovarian follicle stage III; and ovarian follicle stage IV. Orthologous to human ADAMTS1 (ADAM metallopeptidase with thrombospondin type 1 motif 1).

Ensembl:

ensembl_id ENSDARG00000103519

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001481 True 2736 mRNA 0.54 10 673163 681116

Neighbor

gene id symbol gene type direction distance location
XLOC_000924 cyyr1 coding downstream 3446 658405 ~ 669717 (-)
XLOC_000923 appa coding downstream 16470 617620 ~ 656693 (-)
XLOC_000922 atp5pf coding downstream 58525 610082 ~ 614638 (-)
XLOC_000921 CU571081.1 coding downstream 114903 552275 ~ 558260 (-)
XLOC_000920 si:ch73-41e3.7 coding downstream 148730 518853 ~ 524433 (-)
XLOC_000926 adamts5 coding upstream 10622 691738 ~ 714626 (-)
XLOC_000927 NA coding upstream 97459 778575 ~ 779614 (-)
XLOC_000928 gart coding upstream 279093 960209 ~ 999556 (-)
XLOC_000929 NA coding upstream 324821 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 coding upstream 369825 1050941 ~ 1051057 (-)
XLOC_000907 FP067451.1 non-coding downstream 525317 108285 ~ 147846 (-)
XLOC_000931 NA non-coding upstream 462846 1143962 ~ 1253194 (-)
XLOC_000932 NA non-coding upstream 610059 1291175 ~ 1315753 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_05466693_05471714 ADAMTS1 coding CI01000299 null 5465642 ~ 5471987 (-)