XLOC_000922 (atp5pf)


Basic Information

Item Value
gene id XLOC_000922
gene name atp5pf
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 610082 ~ 614638 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001470
TTACGGAACTACGTCACTGCGCGTCATACCCACAAGCGCCCACGGTGATCCGGAAGCGGTTGTTCTTGTCGGTCTGCTGGTTGGTGTCAAACACAAGAAGCATGGCTCTTCACAGTGGATTTGCGCGTGTGTCGTCTCTGCTGCGTTCAGCGCTCAGCGTTTCTCTGCGCAGGAACATCGGCCTCTCCGCCGTCCTCTTCAACAAGGCCAAAGACATGGACCCCATTCAGAAACTCTTCCTGGACAAGATCCGAGACTACAACAGCAAGAGCAAgGCGTCTGGTGGTGTAGTGGACGCTGGTCCGGTGTATCAGAAGAATCTGGCGGAGGAAACCACTAAACTGCAGCGTCTGTATGGAGGAGGAGATCTCAGCAAGTTCCCTCAGTTCAGCTTCACAGAGCCTAAGCTGGACGAGACGACGACTAAATGAAGCGCCTCTGTTCATCACTGCTGAAAACGTAcatcaatatttaataaaaaagctCTGGCTCAAAGATCAGCGTGTGATGCGCAGTTCATGCACTTCAGGTTATGCATCTGTACTCTTGCTCTTGTATGTGATTATTGCGTGTTGATGTCCACAGATGAACGGTTTGATTATGTCTGTTcgtctttaaaatatctgtaatCAGTTTAGTGTCCTCTGGTCAATGTAAGCTTTAAAAGTgctcagacaaaaacaaaacgacTAATGAATGTGCTGAGAATGTAAAGAGAGAGGATAAGCAGAGGATGTGATGCTGAGTgaatatatattatagaaaacaCTGCGTCATCATCTTCATGATCCCGTAAGCTATGGCTTGATTTAAAAACTCATCAGTAAagcttaatattaataaatgaagtACACTAATGTCTGATAACCTTGTTCATTTCATATCAATGCTTTTGTTTAGtgattgttaatatttttattctgcaatgtgggacatgttattattatttgaaaagcATTATCATTTGAGTGTTGCATATGAGTTTGgattataatttaaatgttactgggtaaaaataatgctttataatatatatatacattgttgTAGACAAGATTaggatttttaaaattgtttcccaagtgctgtttaacagatcaGG
>TCONS_00001471
GCGGTTGTTCTTGTCGGTCTGCTGGTTGGTGTCAAACACAAGAAGCATGGCTCTTCACAGTGGATTTGCGCGTGTGTCGTCTCTGCTGCGTTCAGCGCTCAGCGTTTCTCTGCGCAGGAACATCGGCCTCTCCGCCGTCCTCTTCAACAAGGCCAAAGACATGGACCCCATTCAGAAACTCTTCCTGGACAAGATCCGAGACTACAACAGCAAGAGCAAgGCGTCTGGTGGTGTAGTGGACGCTGGTCCGGTGTATCAGAAGAATCTGGCGGAGGAAACCACTAAACTGCAGCGTCTGTATGGAGGAGGAGATCTCAGCAAGTTCCCTCAGTTCAGCTTCACAGGTCTGACATGTGTAATGCGCATCGTTACAGCAGATGACTGAAATACAGCTCTGTTTacacagatttcattcatttacatcGACCGCGAGGATTCTGTGCAGTGAATCTGAAGCAAAAATGAATCAATAAGAGCTGCTTTCTGGATTTCTGTGGAGTTTAACAGCATTcatgaacaatcaaatgtaaaataacgtgCTCCTCATCCTATTAATCAtacaaaataatcatatttaatatGTGTTCATCTTGAATGAGTGGTCTcctcctgtgatgtgactattgcagatgcacacagtGTGATACGGAGGCTCAGCTCTTATATTGTGCAGGTTTAGTGTTTGTTGAACATCAGCAGGTCTGTTCAGTGCTGCTTGATGACGGATCTTCTTCTGTTGTTTTTAGAGCCTAAGCTGGACGAGACGACGACTAAATGAAGCGCCTCTGTTCATCACTGCTGAAAACGTAcatcaatatttaataaaaaagctCTGGCTCAAAGATCAGCGTGTGATGCGCAGTTCATGCACTTCAGGTTATGCATCTGTACTCTTGCTCTTGTATGTGATTATTGCGTGTTGATGTCCACAGATGAACGGTTTGATTATGTCTGTTcgtctttaaaatatctgtaatCAGTTTAGTGTCCTCTGGTCAATGTAAGCTTTAAAAGTgctcagacaaaaacaaaacgacTAATGAATGTGCTGAGAATGTAAAGAGAGAGGATAAGCAGAGGATGTGATGCTGAGTgaatatatattatagaaaacaCTGCGTCATCATCTTCATGATCCCGTAAGCTATGGCTTGATTTAAAAACTCATCAGTAAagcttaatattaataaatgaagtACACTAA
>TCONS_00001472
GATCCGGAAGCGGTTGTTCTTGTCGGTCTGCTGGTTGGTGTCAAACACAAGgttagagcggattttctttCATCGTCTTTATTCTGcatAAGCATGGCTCTTCACAGTGGATTTGCGCGTGTGTCGTCTCTGCTGCGTTCAGCGCTCAGCGTTTCTCTGCGCAGGAACATCGGCCTCTCCGCCGTCCTCTTCAACAAGGCCAAAGACATGGACCCCATTCAGAAACTCTTCCTGGACAAGATCCGAGACTACAACAGCAAGAGCAAgGCGTCTGGTGGTGTAGTGGACGCTGGTCCGGTGTATCAGAAGAATCTGGCGGAGGAAACCACTAAACTGCAGCGTCTGTATGGAGGAGGAGATCTCAGCAAGTTCCCTCAGTTCAGCTTCACAGAGCCTAAGCTGGACGAGACGACGACTAAATGAAGCGCCTCTGTTCATCACTGCTGAAAACGTAcatcaatatttaataaaaaagctCTGGCTCAAA
>TCONS_00001473
GATCCGGAAGCGGTTGTTCTTGTCGGTCTGCTGGTTGGTGTCAAACACAAGgttagagcggattttctttCATCGTCTTTATTCTGcatCATGGCTCTTCACAGTGGATTTGCGCGTGTGTCGTCTCTGCTGCGTTCAGCGCTCAGCGTTTCTCTGCGCAGGAACATCGGCCTCTCCGCCGTCCTCTTCAACAAGGCCAAAGACATGGACCCCATTCAGAAACTCTTCCTGGACAAGATCCGAGACTACAACAGCAAGAGCAAgGCGTCTGGTGGTGTAGTGGACGCTGGTCCGGTGTATCAGAAGAATCTGGCGGAGGAAACCACTAAACTGCAGCGTCTGTATGGAGGAGGAGATCTCAGCAAGTTCCCTCAGTTCAGCTTCACAGAGCCTAAGCTGGACGAGACGACGACTAAATGAAGCGCCTCTGTTCATCACTGCTGAAAACGTAcatcaatatttaataaaaaagctCTGGCT

Function

symbol description
atp5pf Predicted to enable proton transmembrane transporter activity. Predicted to act upstream of or within ATP synthesis coupled proton transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex. Orthologous to human ATP5PF (ATP synthase peripheral stalk subunit F6).

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0006811 ion transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0016020 membrane cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0005739 mitochondrion cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2534 Predicted to enable proton transmembrane transporter activity. Predicted to act upstream of or within ATP synthesis coupled proton transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex. Orthologous to human ATP5PF (ATP synthase peripheral stalk subunit F6).

Ensembl:

ensembl_id ENSDARG00000014313

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001470 False 1102 mRNA 0.41 4 610082 614638
TCONS_00001471 False 1204 mRNA 0.43 3 610327 614583
TCONS_00001472 False 487 mRNA 0.50 4 610689 614592
TCONS_00001473 True 480 mRNA 0.51 4 610693 614592

Neighbor

gene id symbol gene type direction distance location
XLOC_000921 CU571081.1 coding downstream 51822 552275 ~ 558260 (-)
XLOC_000920 si:ch73-41e3.7 coding downstream 85649 518853 ~ 524433 (-)
XLOC_000919 trmt10c coding downstream 96296 508885 ~ 513786 (-)
XLOC_000918 ercc5 coding downstream 115802 474085 ~ 494280 (-)
XLOC_000917 zgc:92518 coding downstream 138157 466780 ~ 471925 (-)
XLOC_000923 appa coding upstream 2982 617620 ~ 656693 (-)
XLOC_000924 cyyr1 coding upstream 43767 658405 ~ 669717 (-)
XLOC_000925 adamts1 coding upstream 58525 673163 ~ 681116 (-)
XLOC_000926 adamts5 coding upstream 77100 691738 ~ 714626 (-)
XLOC_000927 NA coding upstream 163937 778575 ~ 779614 (-)
XLOC_000907 FP067451.1 non-coding downstream 462236 108285 ~ 147846 (-)
XLOC_000929 NA non-coding upstream 391299 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 non-coding upstream 436303 1050941 ~ 1051057 (-)
XLOC_000931 NA non-coding upstream 529324 1143962 ~ 1253194 (-)
XLOC_000932 NA non-coding upstream 676537 1291175 ~ 1315753 (-)

Expression


Co-expression Network