XLOC_000920 (si:ch73-41e3.7)


Basic Information

Item Value
gene id XLOC_000920
gene name si:ch73-41e3.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 518853 ~ 524433 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001468
CAAAACAGATTTTGCACACAAATAAAACAGCTCTGATATATTTCTGAGAAAGCCCAACATATTTACTCTTCGTCAACTgtttaaataatactttttcaCAATTAGCATACACTAAGCACTACACTATTTACACCAGCCTGATGATGATCAATAACACCTGCCACATGATCTCGATCTGAACTGAGAGCTGAAGAACTACTTTAACTTCAGattCCTAGTTAAAGTCCTGCATGATGTCAGAGTTCCCAGAATCCAGTGACTCTGAGTTCCCGTACTCGTTCTCTGCTGACGGCCGGCtgcgacacacacacaccggtgaGCCATACCGCTTCCAGTTCCACCTACGGGACGCTCTGCAGACGGAGACAGAGCAGCGTAGACTCTGCAGATTCCTGACGCAGCACGTTTACACACTCCTGCAGCAGAACTTTCAGATGCGTCTGGAGGAACACTGCTCTGTGTTCATGACCCCCGGAGCCCTGGAGCATGCTGGGTGTTTGCTGCTGCTCCTGCAGGACCGGGGAACAGTGCGAGGTGGACTCTGGAGCTGGAAGATCACGGCTCACGAGGGCTTGGAGACCGGCAGTCAGATCCCGTATTTGCGCTGGGCTCTGATGGAGAACTACGCCGTCATCATCATGAACCCCAATGGAGATCTGCACAACAAGACGCCGGAGGAGCATGTGTCTGAGGTGTGGCGGCGTCTGGTGTGTGTGAGCGCAGCGCAGCATGTGTTTGTGGTGGCTCATGGATATGGAGGTCTGGCGTTTGTGGATCTGCTGTGCTGCCGGATGGAGGAGGTGCAGCGGCGGGTCACAGCCGTGGCCTTTCTGGACTCCAGTCACAGTCTGTGGCATCAGCCGCTGGGGAAAGCCGGACGAGACTGGCTAAGGTGTCACTCCAGGACGTGGATCTTGAGCACTAAAGCCCTGAACCGCTCGGTGGGCTCGCTGAAGGCCGGATGCACACAGATCTCTGCCGGGACTCAGTGTCACGACTCCGCGCCCGCCGTCTGCATGGAGTCTGTGTTTCGCTTCTTCAGCAAAACCATCAAACCCAAAGCCACACCGACACCGTTCGAGATCATCACCCGCAGCAGGAGCCGCTCACAcgaccacaacaacaacaacaaacactgaGAGTGAATAAAGCACCATCTGCATCACA

Function

symbol description
si:ch73-41e3.7 Predicted to contribute to siRNA binding activity. Predicted to be involved in heterochromatin assembly by small RNA. Predicted to be active in nucleus. Orthologous to human FAM172BP (family with sequence similarity 172 member B, pseudogene).

GO:

id name namespace
GO:0031047 gene silencing by RNA biological_process
GO:0031048 heterochromatin assembly by small RNA biological_process
GO:0005634 nucleus cellular_component
GO:0035197 siRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-163 Predicted to contribute to siRNA binding activity. Predicted to be involved in heterochromatin assembly by small RNA. Predicted to be active in nucleus. Orthologous to human FAM172BP (family with sequence similarity 172 member B, pseudogene).

Ensembl:

ensembl_id ENSDARG00000089799

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001468 True 1167 mRNA 0.54 4 518853 524433

Neighbor

gene id symbol gene type direction distance location
XLOC_000919 trmt10c coding downstream 5067 508885 ~ 513786 (-)
XLOC_000918 ercc5 coding downstream 24573 474085 ~ 494280 (-)
XLOC_000917 zgc:92518 coding downstream 46928 466780 ~ 471925 (-)
XLOC_000916 METTL21C coding downstream 56688 454315 ~ 462165 (-)
XLOC_000915 rasa3 coding downstream 107522 357518 ~ 411331 (-)
XLOC_000921 CU571081.1 coding upstream 27842 552275 ~ 558260 (-)
XLOC_000922 atp5pf coding upstream 85649 610082 ~ 614638 (-)
XLOC_000923 appa coding upstream 93187 617620 ~ 656693 (-)
XLOC_000924 cyyr1 coding upstream 133972 658405 ~ 669717 (-)
XLOC_000925 adamts1 coding upstream 148730 673163 ~ 681116 (-)
XLOC_000907 FP067451.1 non-coding downstream 371007 108285 ~ 147846 (-)
XLOC_000927 NA non-coding upstream 254142 778575 ~ 779614 (-)
XLOC_000929 NA non-coding upstream 481504 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 non-coding upstream 526508 1050941 ~ 1051057 (-)
XLOC_000931 NA non-coding upstream 619529 1143962 ~ 1253194 (-)
XLOC_000932 NA non-coding upstream 766742 1291175 ~ 1315753 (-)

Expression


Co-expression Network