RNA id: TCONS_00003291


Basic Information

Item Value
RNA id TCONS_00003291
length 810
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id XLOC_000932
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1291175 ~ 1315753 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttgcatgtaAACTCTTCAATTCGTTCACACAAGTGGCGGTTGCTGTTGGTGAGGACTATACATATCACCGTGGACCATGGCTTCAGCTAACAACTAATTCTAAAAGAAAAGTCAACTACTGTACATCTAGGATGGGCTTTTAGGtgctgggttgcagatGCAAGGGCATCCACAACATAATCATATTTCAGAgtacttggtggttcattcctctgtggctaCCTCTGAGTCAGGGACTAAACTGAACTCTGCCAAGCGTTACCGAGGATGCTGTGGAGTGTGATGGCACATATAAGGGAGTCGGTGTGAAAGAGTTGAGCGTATTGTTTGTAGTAAGAGATCCGCCTCGGGCTCGACACATCTCTTTCCTTCCGAGCTGCGGTTCTGATGGGCTTCCAGCTGTCATTAAAGACGCAGGAGAATCACATGAACCTTCGCTGTCCCGCACTCTTACGgatcacatgcacacactctgCTGATAGTCAAAGAGCATTCAGAAGCagcccaacagggaaaaccaaaAACTGACACACACGCGCATACATTCAAACCACTGCTCGAGATGTGTTATTTCAGGAGGGTTTATAATCTTCTGGTGAGCTGGAAAAAGCCTGATGCAATGAATGATGGTGGAGCTGCAAGGTAAACATGACCAAAAAGAGAAAAACTATAAGATTAGTAACATTTTATTAGTCAATTTCTGTGCAGATGCAAAAGTGCTTTGAATAGATTTTGTggaattattcatttgtgttcGAAAAACATCAAACGTCTTGTTTTTCAGTATTGTTATTAACTCTACccgtg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002897 lncRNA downstream 37981 1143962 ~ 1253194 (-) True XLOC_000931
TCONS_00003290 lncRNA downstream 276309 1005937 ~ 1014866 (-) True XLOC_000929
TCONS_00003289 lncRNA downstream 511561 778575 ~ 779614 (-) True XLOC_000927
TCONS_00001475 lncRNA downstream 668996 620990 ~ 622179 (-) False XLOC_000923
TCONS_00001467 lncRNA downstream 777458 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001488 lncRNA upstream 35142 1350111 ~ 1352997 (-) False XLOC_000933
TCONS_00001487 lncRNA upstream 35142 1350111 ~ 1352997 (-) True XLOC_000933
TCONS_00002899 lncRNA upstream 176972 1491941 ~ 1499393 (-) False XLOC_000935
TCONS_00002898 lncRNA upstream 176972 1491941 ~ 1499393 (-) True XLOC_000935
TCONS_00003294 lncRNA upstream 240327 1555296 ~ 1583206 (-) False XLOC_000936
TCONS_00001483 mRNA downstream 291619 960209 ~ 999556 (-) False XLOC_000928
TCONS_00001484 mRNA downstream 291619 973467 ~ 999556 (-) True XLOC_000928
TCONS_00001482 mRNA downstream 576549 691738 ~ 714626 (-) True XLOC_000926
TCONS_00001481 mRNA downstream 610059 673163 ~ 681116 (-) True XLOC_000925
TCONS_00001480 mRNA downstream 621458 658405 ~ 669717 (-) True XLOC_000924
TCONS_00001489 mRNA upstream 47963 1362932 ~ 1402303 (-) True XLOC_000934
TCONS_00001490 mRNA upstream 304025 1618994 ~ 1627487 (-) False XLOC_000937
TCONS_00001491 mRNA upstream 304184 1619153 ~ 1631399 (-) True XLOC_000937
TCONS_00001494 mRNA upstream 559458 1874427 ~ 1885594 (-) False XLOC_000939
TCONS_00001495 mRNA upstream 560101 1875070 ~ 1885516 (-) False XLOC_000939
TCONS_00001485 other downstream 240118 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001476 other downstream 666095 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001460 other downstream 819250 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 1137329 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 1241340 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001492 other upstream 555892 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 559039 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001497 other upstream 569391 1884360 ~ 1928111 (-) False XLOC_000939
TCONS_00001500 other upstream 575202 1890171 ~ 1894005 (-) False XLOC_000939
TCONS_00001513 other upstream 1982398 3297367 ~ 3297451 (-) False XLOC_000952

Expression Profile

//