RNA id: CI01000189_00297654_00300990.mRNA


Basic Information

Item Value
RNA id CI01000189_00297654_00300990.mRNA
length 1392
RNA type mRNA
GC content 0.51
exon number 3
gene id CI01000189_00297654_00300990
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 297654 ~ 301458 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGTACAGAATAGACATGCCTGGTTCTAGTAGTGCCTTTATTCCAACAATTAATGCCATAACGACCAGTCAGGACTTGCAGTGGATGGTTCAGCCCACAGTAATCACATCCATGTCTAATCCGTACTCCCGGCCTCACCCGTACGGCCTGTCTGTGTCTAGCGGCCCGGGCCTCCTCAGCCACACAGCTCTCACACGGCCCGGGGTCATCCGGTCCATCGGCGACGCCCGTGGTCGACGTAAGCGAGATGAGCAGTTTTATCTGCAGCTCACCCCAGAGGAAGAAGAAAAACGGAGAGTCAGGCGAGAAAGAAACAAACTAGCTGCAGCAAAATGTCGGAACCGCAGAAGAGAACTGACCGAGATGCTGCAAGGGGAAACTGAGAAGTTAGAGGAGGAGAAGGCTGACCTGCAGAAAGAAATCGAGACCCTGCAGAAGGAAAAGGACAAGTTGGAATTTATGTTGGTGGCCCACAACCCTGTGTGCAAACTGCCACTTGAAGAACGCCATCAGAGCTTGCACTCCCAGCAGTGTGCGCCCCTTTCTCTGACCATGCGTTCCAACCTGGGTCCCCGGGGTCCGATGAGTACTCTCAACCCAGTGGTGGTTAAACAGGAGCCTTTGGAAGATGACGACGACGATGAGGACGAAGAAAAAGCCCAGCATTCGGTCATCAAGCCCATCTGCCTAGGTGGCGGCATGTATTGCTCTGACGGAGACAGCCTCAACACGCCCGTGGTGGCTGCTTCCACCCCGGTGTCCACCCCGAACAACCCAAGCCTCATCTTCACATACCCCAGCATGCTCGAGCCCGAGAGCCCATCGCCCTCGTCGGAGTCCTGCTCCAAAGCCCACCGTCGGAGCAGCAGCAGCGGTGACCAATCATCAGATTCCCTGAATTCTCCCACCCTGTTGGCGCTTTGAAGGAAAATTCGACTTTCATCATTCTTGTGGATCTCCAGAGCACGCTCAGCTGGGATTTGAGTGGGGACTTCACCTCAACCAAGCTGAGAACCCTCAAGGGCTAATTTGCTCGTTTTATTTAAACGTTTCAGAAGAGAGTTTTTGTTGTCGTTGTTTAAATGTACGTGCGAATTCCACTTGCTATTTCAGTGGCGAGGTTTTGTAATGAAGACGAAAAAAGTTGGAGGAAACCGCTGTTCAGACCGCTTGGTATTTCCTGCTGACTAAAAAGCGAGGGGAATTGCTTGAAAATTGAATTCTTGATAGGTACAGAATCAGACATTGGACACTACGCCCTCAGAACGTCATTATCCTTGTATTTGTGACGTGTGAATATTGTCCCATTGTATTTTGTGTCTTGCTGTTTATAATATTTAGGGTTCACTGGATGAGCCTGACTGCTGAGTGTCGAAAGAACCATCTTGTATA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09030 FOSL2; fos-like antigen 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU433830 lncRNA upstream 14279 282954 ~ 283375 (+) True G379481
TU433865 lncRNA upstream 28760 267017 ~ 268894 (+) True G379516
TU433864 lncRNA upstream 112377 184928 ~ 185277 (+) True G379515
TU433812 lncRNA upstream 146239 146137 ~ 151415 (+) True G379470
TU433831 lncRNA upstream 154328 136040 ~ 143326 (+) True G379482
TU433868 lncRNA downstream 7520 308978 ~ 309182 (+) True G379519
TU433906 lncRNA downstream 106065 407523 ~ 407762 (+) True G379556
TU433907 lncRNA downstream 106615 408073 ~ 408311 (+) True G379557
TU433908 lncRNA downstream 107099 408557 ~ 408761 (+) True G379558
TU433910 lncRNA downstream 112782 414240 ~ 414491 (+) True G379560
CI01000189_00183881_00277704.mRNA mRNA upstream 19950 183881 ~ 277704 (+) True CI01000189_00183881_00277704
CI01000189_00086672_00092620.mRNA mRNA upstream 205034 86511 ~ 92620 (+) True CI01000189_00086672_00092620
CI01000189_00322834_00332685.mRNA mRNA downstream 21376 322834 ~ 332750 (+) True CI01000189_00322834_00332685
CI01000189_00438982_00445216.mRNA mRNA downstream 137524 438982 ~ 445645 (+) True CI01000189_00438982_00445216
CI01000189_00448469_00457564.mRNA mRNA downstream 147011 448469 ~ 458185 (+) True CI01000189_00448469_00457564
CI01000189_00537167_00546397.mRNA mRNA downstream 235709 537167 ~ 547307 (+) True CI01000189_00537167_00546397
CI01000189_00552262_00553370.mRNA mRNA downstream 249375 550833 ~ 553486 (+) True CI01000189_00552262_00553370
TU433965 other downstream 174157 475615 ~ 496908 (+) True G379600
TU434221 other downstream 711088 1012546 ~ 1012903 (+) False G379799
TU434222 other downstream 711088 1012546 ~ 1012834 (+) True G379799
TU434037 other downstream 714573 1016031 ~ 1059385 (+) True CI01000189_00987665_01058757
TU435687 other downstream 2537763 2839221 ~ 2841125 (+) True G381120

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023129 True 3632 mRNA 0.40 5 NC_007128.7 41302660 ~ 41318547 (+)
eurasian perch (Perca fluviatilis) TU115339 True 1989 lncRNA 0.46 2 NC_053119.1 17608426 ~ 17611533 (+)
mexican tetra (Astyanax mexicanus) TU115339 True 3792 lncRNA 0.42 2 NC_035905.1 34222905 ~ 34226742 (-)