RNA id: TU437002


Basic Information

Item Value
RNA id TU437002
length 314
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G382238
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4713138 ~ 4713451 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCAGTGAGGCCTGCATTCAAAGCAATGACATTTCCTCTCTCAAGATCCATAAAGGTAATAAAAACATATTTAAAACAGTTCATGTGAGTTAAGTGGTTCTACCTTAATATTATAAAGCGACAAGAAAACAAAATAACGACTTTTCAACAATATAGTGATGGGCCGATTTCAAAACACTGCTTCGGAGCTTTACGAATCGAATCAGTGATTCGGATCTCCTATCAAATGGCTAAACTGGTTAAATCACGTGACTTTGGCGCTCCGAGTCACTGATTCAATTCGTGAAAAAATATCTTAATTTGTGTTCCGAAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436942 lncRNA downstream 145850 4541188 ~ 4567288 (-) False G382198
TU436943 lncRNA downstream 145850 4541188 ~ 4567288 (-) True G382198
TU436944 lncRNA downstream 172194 4535558 ~ 4540944 (-) False G382198
TU436952 lncRNA downstream 366923 4342108 ~ 4346215 (-) True G382201
TU436894 lncRNA downstream 534722 4172519 ~ 4178416 (-) True G382166
CI01000189_04657758_04673288.mRNA mRNA downstream 39850 4657299 ~ 4673288 (-) True CI01000189_04657758_04673288
CI01000189_04633635_04652408.mRNA mRNA downstream 58852 4633635 ~ 4654286 (-) True CI01000189_04633635_04652408
CI01000189_04572894_04573508.mRNA mRNA downstream 139485 4572859 ~ 4573653 (-) True CI01000189_04572894_04573508
CI01000189_04432088_04472364.mRNA mRNA downstream 240432 4431934 ~ 4472706 (-) True CI01000189_04432088_04472364
CI01000189_04271632_04393877.mRNA mRNA downstream 319261 4271632 ~ 4393877 (-) True CI01000189_04271632_04393877
CI01000189_04718699_04724685.mRNA mRNA upstream 4996 4718447 ~ 4724685 (-) True CI01000189_04718699_04724685
TU436879 other downstream 567054 4145590 ~ 4146084 (-) True G382153
TU436773 other downstream 820229 3885562 ~ 3892909 (-) True G382052
TU436781 other downstream 880525 3830627 ~ 3832613 (-) True G382060
TU435927 other downstream 1706694 2998873 ~ 3006444 (-) True G381317
TU435899 other downstream 1749684 2959108 ~ 2961667 (-) True G381299

Expression Profile