RNA id: TCONS_00001510


Basic Information

Item Value
RNA id TCONS_00001510
length 1790
RNA type mRNA
GC content 0.34
exon number 2
gene id XLOC_000948
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2454094 ~ 2457546 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTTTGATCTGTCAAGGGACTTTAAAGCAGCTCTGTTCGTCCGACGTTGATAAAACTTTCAGTCTGACCTCTGAAAATGATTGCAATCCATATATTGCTGCTGGTTTTCTCAAATATTGTGCTCCCTGCATTGTGCATTAACGTGTTTGTGTACGGCACACTAAAGAAAGGCCAGTCAAACTATCATGAACTGACAAACACTACACACGGTCAAGCTGAGTTCATCACCTGTGCCCGGACCAAAGATCCATACCCTATGGTGATCGCCACCAAAGACAAATTCCCCTTCCTGCTGAATGTGCCTGGCTCTGGACAGCAGGTCTACGGTGAGATCTACAACGTTGACCAGAATATGCTGGATTTCCTGGATGAGTTTGAGGAATGTCCAGATCTCTACCAGCGCACCTCCATCCAGCTGAAGATCCTGAAGGGGAATGGAGATTCTGAGGAGGCTTTTGTCTACAGCACCTCTACATTTGATCCTGACTGGCTCAACAAACCCACATTCAGTGTTTATGATGCCACCGGTGATCCTGGAAACAATTGTGTGCCTCGAGAATAAGAGAATAATAACTTCTGGTAGAGCTTGGGCGATGGATCTTTTTCACAATATCAGGTTTCTCAGCAGCCATCAtatttgggtaaacttagagcacagtgaatgaggaagtacaacaaatcattatttacaatcttatttgttgaaataataaaagaaaaactacacaatggtgttatcaagactttcataGGAAGGAAAACagtagtgtgagactgataacagcagccagaagagagaattattaataattaaaagaatATTTAATGATTAAGAAGAATtcaatttactgtcctgtcctcCAATAGACACTGAATTTTAAACGTCTTGCAAAAacggtaatttatttatttttgtaatttgatgcaaatatgatataatacacacataaatgCATGTACATGGTTATATTTGGttatgttttaaaaatcaaaatattaaaaacatttaaggatttaagattCGTAAATGCAACATAACAGACTTGTGAAAAGGGTccgttaattgaaataaaatcacAAACACTGTTAAGCAATGTTGGGATATTCATACACATCTTGTCAGTGAAGCACAGTTCCATGATCTGTAGTAAATCCctttaaagtccctttaaggcaagtaatttccaTAAAAACTTACCTAAGTTTGAAGTCAAAGCATGTTATAAaatgtgataataataatgactgataaTAATGATTTGTTGTTACTTAATTGTTCATTTTGTAGCCGGATTCTTTATTTGGTGTTGGGTGGTATAATTTAACGGCATGCAAAACAAATAGGGTGAATTACTGTGTGTTATATGGCACTTTATTACAATTTACCAGATGCAGGAACGCTTTAGATTATTAAACTGGACACAATCTTTAAGATCTATTTTTATAATGTATGATTtgcacaaaaatgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatataaattgtgTAAAAATTATTTGATTGAAATATGTTGTGCTTTATTAGGGGAAAAACACTGGAGTACTTTATATGTAGCGATCAGGAATTATCTTTCTGTGAATAACTGTACAATACTGTGTACTACTGTATACAATATACTTTATACTTTCATGAGTAAATTGAATTGcactttacattaaaataatttcttcTGAAGCACAGTGCTGATTGTTTTATGAACAAATAACAAAATCTGAAGATTTTTTT

Function

GO:

id name namespace
GO:0042219 cellular modified amino acid catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0061929 gamma-glutamylaminecyclotransferase activity molecular_function
GO:0016829 lyase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-94 Predicted to enable gamma-glutamylaminecyclotransferase activity. Predicted to be involved in cellular modified amino acid catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Orthologous to human GGACT (gamma-glutamylamine cyclotransferase).

Ensembl:

ensembl_id ENSDART00000103795

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003304 lncRNA downstream 203058 2239211 ~ 2251036 (-) True XLOC_000945
TCONS_00003303 lncRNA downstream 352833 2093996 ~ 2101261 (-) True XLOC_000944
TCONS_00003302 lncRNA downstream 357745 2093996 ~ 2096349 (-) False XLOC_000944
TCONS_00003301 lncRNA downstream 448559 2000666 ~ 2005535 (-) True XLOC_000940
TCONS_00003300 lncRNA downstream 448572 2000666 ~ 2005522 (-) False XLOC_000940
TCONS_00002901 lncRNA upstream 37475 2495021 ~ 2502744 (-) False XLOC_000949
TCONS_00003305 lncRNA upstream 40327 2497873 ~ 2502743 (-) True XLOC_000949
TCONS_00001511 lncRNA upstream 247058 2704604 ~ 2714275 (-) True XLOC_000950
TCONS_00003306 lncRNA upstream 839061 3296607 ~ 3299853 (-) False XLOC_000952
TCONS_00001519 lncRNA upstream 848003 3305549 ~ 3309194 (-) False XLOC_000953
TCONS_00001508 mRNA downstream 909 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001509 mRNA downstream 920 2450140 ~ 2453174 (-) True XLOC_000947
TCONS_00001506 mRNA downstream 4699 2446996 ~ 2449395 (-) False XLOC_000947
TCONS_00001507 mRNA downstream 5502 2447025 ~ 2448592 (-) False XLOC_000947
TCONS_00001505 mRNA downstream 119840 2331637 ~ 2334254 (-) True XLOC_000946
TCONS_00001512 mRNA upstream 642698 3100244 ~ 3295045 (-) True XLOC_000951
TCONS_00001524 mRNA upstream 2896943 5354489 ~ 5394752 (-) False XLOC_000963
TCONS_00001525 mRNA upstream 2906023 5363569 ~ 5394791 (-) True XLOC_000963
TCONS_00001526 mRNA upstream 2992231 5449777 ~ 5455502 (-) False XLOC_000964
TCONS_00001527 mRNA upstream 2992324 5449870 ~ 5455498 (-) True XLOC_000964
TCONS_00001497 other downstream 525983 1884360 ~ 1928111 (-) False XLOC_000939
TCONS_00001500 other downstream 560089 1890171 ~ 1894005 (-) False XLOC_000939
TCONS_00001493 other downstream 568494 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001492 other downstream 578976 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001486 other downstream 1138341 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001513 other upstream 839821 3297367 ~ 3297451 (-) False XLOC_000952
TCONS_00001514 other upstream 839938 3297484 ~ 3297570 (-) False XLOC_000952
TCONS_00001515 other upstream 840057 3297603 ~ 3297755 (-) False XLOC_000952
TCONS_00001516 other upstream 840302 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001517 other upstream 840460 3298006 ~ 3298088 (-) False XLOC_000952

Expression Profile

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