RNA id: TCONS_00001512


Basic Information

Item Value
RNA id TCONS_00001512
length 1635
RNA type mRNA
GC content 0.55
exon number 8
gene id XLOC_000951
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 3100244 ~ 3295045 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAAATGGCGATCCGTGGAattttgttttatacattttttgcgGTTTTCACAGATGTCTGTCAGGGGACTTTAATGGACTGCGAAGAAGTGCGTAAAGTTTTTCAGTTGAAACAAATCGGACCTGCAAAATCAATACCTGACACGCCGAGAACAGGTTCAGACCTGCAGGTTTGCTTATCCAGGAATCTAACATGCTGCACCAAAAAGATGGAGGAGCGTTACCAGGTGGCGGCCCGGCGGGATATTCAGAACCTTCTCCAGATCTCTAGCTCCAGCCTAAAGTTCCTCTTCTCACGAAATGTGGCCGCTTTCCAAGAAAGCGTGGAGTCTCTGGTGCGTCAGGCGGAGAACCACACCCTCTCCATCCTCCATCAGTCCCAGCGTGATCTCTCCAGCCCAGCAGCATCAGCACCAGTCGGGGAGTTTTTCACAGAAGTGGCTCTGTTCATCCTGGGCTCTGAGCTCAGTCTAGAAGAGTCCTCTCAGAGCTTCTTCAACGCTCTTTTCCCCTTAATATACGAGCGTCTGATTGACTCCCGTCTGTCTCCTCCATACGCCGAATGCCTGCGCTCGTCTGCTCAAGATCTAGCACCGTTCGGAGCAGCCCCAATCCGCCTGGCGTCCCAAATCGCCCATGCTTCTCTACCTGCTCGCGTGTTTCTCCAAGCGCTCCATTTGGGCATCGAGATCATAAATACGACCGATCACATCCAGCTGAGCCGCGAGTGCAGACGTGGCCTACTGAGGATGAGCTACTGCCCGCACTGCAAGGCTCTGACCTCCAGCAAACCCTGCTTGGGATACTGCCTGAACGTGGTGCGCGGGTGTCTGGCTAACCTGGCTGAAGTGGATGCCCACTGGAGGGAGTTTGTACGCTCGCTGGAGACGCTGGCAGTACGGATGCACGGAGAGCTGGATCTGGAGCAGGTGCTGCTGGGGGCGCATGAGCTGGTGAGGGACGCTGTGGCGCACGCTCAGAGGAGCACAGCGAGGATACATGCGCAGGTGCAACGTGTGTGTGGTCAGTCCAGCAGATGGACGGAGCCGGTGAACAGCGTCCAGCACAGCACAGGACGAGCATCAGACTCGATACCACTGAGAGGAGCAAACAGAAACACAGAGGACTCGCTCAGCAGCCGCAGAACTGAGTTCCTCCACAGTCTGCGTTTATATCGCACTTTTTACGGCGCTCTGGCTGATCAGCTGTGCATCAGTGAACTGGCCTCTGCAGACGGACGGGCCTGCTGGAACGGAGACGACGTGGCCAGAAGCTATACTCTGCGAGTGGTTGGCAATGGGATTAAAGCGCAGGCTGAAAACCCAGAAGTCAAAGTGAAGGAGGCCGATCCGGTGATCAATCAAGTCATTGATAAACTCAAGCACATCAATCAGCTGCTGCAGGGCAGGTCGATCCCAAAACTGGGCTCTCTGGACCAGATCGAGACGGGCAGCGGAGACGGAAACAGCGGAGACTGTGATGATGAGGACGGATGCTGGGGATCAGGGAATGGAGCAGTCCAGAGGAGAGGGACAGTCACTAAATTGTTTGGCAGCGAATCCAGACGCTCGCTATGGAAAAACAAAAGGCGTCAGCGAGGCGTATCGGCAGGGAGTCGCATTGATCTCCAGTAA

Function

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0016477 cell migration biological_process
GO:0009966 regulation of signal transduction biological_process
GO:1905475 regulation of protein localization to membrane biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0046658 anchored component of plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-140106-260 Predicted to be involved in cell migration; positive regulation of canonical Wnt signaling pathway; and regulation of protein localization to membrane. Predicted to act upstream of or within regulation of signal transduction. Predicted to be located in collagen-containing extracellular matrix and membrane. Predicted to be anchored component of plasma membrane. Predicted to be active in cell surface. Is expressed in several structures, including anal fin; blastomere; central nervous system; cloaca; and ventral fin fold. Orthologous to human GPC5 (glypican 5).

Ensembl:

ensembl_id ENSDART00000157572

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001511 lncRNA downstream 385969 2704604 ~ 2714275 (-) True XLOC_000950
TCONS_00002901 lncRNA downstream 597500 2495021 ~ 2502744 (-) False XLOC_000949
TCONS_00003305 lncRNA downstream 597501 2497873 ~ 2502743 (-) True XLOC_000949
TCONS_00003304 lncRNA downstream 849208 2239211 ~ 2251036 (-) True XLOC_000945
TCONS_00003303 lncRNA downstream 998983 2093996 ~ 2101261 (-) True XLOC_000944
TCONS_00003306 lncRNA upstream 1562 3296607 ~ 3299853 (-) False XLOC_000952
TCONS_00001519 lncRNA upstream 10504 3305549 ~ 3309194 (-) False XLOC_000953
TCONS_00001520 lncRNA upstream 10504 3305549 ~ 3330435 (-) True XLOC_000953
TCONS_00003307 lncRNA upstream 549791 3844836 ~ 3846716 (-) False XLOC_000954
TCONS_00003308 lncRNA upstream 549791 3844836 ~ 3846864 (-) True XLOC_000954
TCONS_00001510 mRNA downstream 642698 2454094 ~ 2457546 (-) True XLOC_000948
TCONS_00001508 mRNA downstream 647059 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001509 mRNA downstream 647070 2450140 ~ 2453174 (-) True XLOC_000947
TCONS_00001506 mRNA downstream 650849 2446996 ~ 2449395 (-) False XLOC_000947
TCONS_00001507 mRNA downstream 651652 2447025 ~ 2448592 (-) False XLOC_000947
TCONS_00001524 mRNA upstream 2059444 5354489 ~ 5394752 (-) False XLOC_000963
TCONS_00001525 mRNA upstream 2068524 5363569 ~ 5394791 (-) True XLOC_000963
TCONS_00001526 mRNA upstream 2154732 5449777 ~ 5455502 (-) False XLOC_000964
TCONS_00001527 mRNA upstream 2154825 5449870 ~ 5455498 (-) True XLOC_000964
TCONS_00001528 mRNA upstream 2209083 5504128 ~ 5542565 (-) False XLOC_000965
TCONS_00001497 other downstream 1172133 1884360 ~ 1928111 (-) False XLOC_000939
TCONS_00001500 other downstream 1206239 1890171 ~ 1894005 (-) False XLOC_000939
TCONS_00001493 other downstream 1214644 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001492 other downstream 1225126 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001486 other downstream 1784491 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001513 other upstream 2322 3297367 ~ 3297451 (-) False XLOC_000952
TCONS_00001514 other upstream 2439 3297484 ~ 3297570 (-) False XLOC_000952
TCONS_00001515 other upstream 2558 3297603 ~ 3297755 (-) False XLOC_000952
TCONS_00001516 other upstream 2803 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001517 other upstream 2961 3298006 ~ 3298088 (-) False XLOC_000952

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_01003547_01034507.mRNA True 1469 mRNA 0.48 5 CI01000299 1003319 ~ 1034812 (-)