RNA id: TU471334



Basic Information


Item Value
RNA id TU471334
length 202
RNA type TUCP
GC content 0.38
exon number 1
gene id G410258
representative True

Chromosome Information


Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 3901950 ~ 3902151 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACCAACAGAGCTGAACACCTACAGCATCGAGCATCAACAATACTTTTACTTTTGTTATTTTCATTAGTAAATCTTCTCGTTGGCAGAATGAACTGCAAAATCTTTTCAGTCTTTGTTATTGTTGCTGTGGCATGTCTGACCATTACTGAAGCAATGAGTCTTAGAGGTCTGGGTGTAGATCTACGCTGTCGCTGCATTAAAACAGAGAGTCGACGCATTGGTAAACACATAGAGAGTGTGGAGCTCTACCCTCCTAGCCCTCACTGTAAAGATACAGAGATCATTGCCACCCTGAAGGAAACCAAGCAGGAGATCTGTCTGGACCCTACTGCTCCCTGGGTTAAGAAGGTCATTGAGAAGATCCTTGCCAACAAAGCACCATGAATATCTGGACCATCTGTGATGTTGAGCCTGAGGATATGCACAATATTTTAACCTGCACCATTCTGCTTGGTTATGTTTAAAACCGTTTGTTCAATGTTTTTGTTTATATAAGTGCTGTGCTATATATATATATATGTATTTATGTATTTATTTATTATATATTTTTCAATAAAACAATTTTATACTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU471414 lncRNA upstream 24152 3876685 ~ 3877036 (+) True G410335
TU471413 lncRNA upstream 25086 3875892 ~ 3876102 (+) True G410334
TU471341 lncRNA upstream 182446 3707467 ~ 3718742 (+) True G410263
TU471328 lncRNA upstream 317074 3583880 ~ 3584114 (+) True G410253
TU471317 lncRNA upstream 347202 3553750 ~ 3553986 (+) True G410242
TU471427 lncRNA downstream 9223 3911374 ~ 3913993 (+) True G410345
TU471399 lncRNA downstream 14610 3916761 ~ 3938947 (+) True G410320
TU471402 lncRNA downstream 36886 3939037 ~ 3939682 (+) True G410323
TU471435 lncRNA downstream 50679 3952830 ~ 3953045 (+) True G410353
TU471436 lncRNA downstream 51025 3953176 ~ 3953414 (+) True G410354
CI01000300_03773519_03831065.mRNA mRNA upstream 69766 3773362 ~ 3831422 (+) True CI01000300_03773519_03831065
CI01000300_03769789_03773233.mRNA mRNA upstream 127926 3768199 ~ 3773262 (+) True CI01000300_03769789_03773233
CI01000300_03752633_03755353.mRNA mRNA upstream 144328 3752633 ~ 3756860 (+) True CI01000300_03752633_03755353
CI01000300_03744731_03749017.mRNA mRNA upstream 152165 3744410 ~ 3749023 (+) True CI01000300_03744731_03749017
CI01000300_03694786_03699730.mRNA mRNA upstream 201215 3694786 ~ 3699973 (+) True CI01000300_03694786_03699730
CI01000300_03924558_03934407.mRNA mRNA downstream 22407 3924558 ~ 3935360 (+) True CI01000300_03924558_03934407
CI01000300_03954605_03969070.mRNA mRNA downstream 52454 3954605 ~ 3970439 (+) True CI01000300_03954605_03969070
CI01000300_03972562_03976190.mRNA mRNA downstream 70411 3972562 ~ 3976225 (+) True CI01000300_03972562_03976190
CI01000300_03981015_03991839.mRNA mRNA downstream 78864 3981015 ~ 3992010 (+) True CI01000300_03981015_03991839
CI01000300_03994394_03997804.mRNA mRNA downstream 92243 3994394 ~ 3998763 (+) True CI01000300_03994394_03997804
TU471035 other upstream 628790 3271685 ~ 3272398 (+) True G409984
TU470056 other upstream 1587294 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU469855 other upstream 2142152 1749900 ~ 1759036 (+) False G408928
TU469856 other upstream 2142152 1749900 ~ 1759036 (+) True G408928
TU469837 other upstream 2266219 1633030 ~ 1634969 (+) True G408910
TU471472 other downstream 221547 4123698 ~ 4124416 (+) True G410382
TU471478 other downstream 293495 4195646 ~ 4196555 (+) True G410388
TU472695 other downstream 1988916 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754
TU473010 other downstream 2567094 6469245 ~ 6469705 (+) False G411777
TU474898 other downstream 5042332 8944483 ~ 8948603 (+) True G413459

Expression Profile