RNA id: TU471478


Basic Information

Item Value
RNA id TU471478
length 530
RNA type TUCP
GC content 0.41
exon number 3
gene id G410388
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 4195646 ~ 4196555 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGTCAAGACTTGCTCTCGTCACACTCATGTGTGTTTTGTTGTTCAGTCAAAACAGAATGTATGGAGCAGAAGTGGAGATTAAAGTCAGACCAGGAGACAACATCACTCTCTACTGTGATCGCTCTTTAACTCTTCATTTTAACTTTGTATGGATAAGAAACTGCTCTCATGAAAATCAACCCTCTCTTATAATAAATGTAATGAGTTTGGACCTGGGGACATTAAAGCGTTTCAGCTCTGTCTACAACCGCTCCAGTAATTCTTATGATCTACATATTAATAACATCAGTGTCTCTGATCTGGGACTGTATTACTGTGCAGAAGTAGAGAATAAAGTATTTGAAGATGAAAAAGGCAGGACCTCCGGATTTGAAGTGTACTATTATGGAAACCAAAAAACTCGTCTCTCTCTTGCAGAGGAAGTAACTTCATGTTCTGGACTCTTGAACATCACCTCCACTCCTCGTGTATCAGACTGTGTTCTCTGCTGGACGCTGCTGTTCAGTGTGTGTCCGGTGTGTGTTCTCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471463 lncRNA upstream 66291 4127176 ~ 4129355 (+) True G410375
TU471452 lncRNA upstream 110464 4083018 ~ 4085182 (+) True G410368
TU471473 lncRNA upstream 142325 4050447 ~ 4053321 (+) True G410383
TU471448 lncRNA upstream 175905 4019536 ~ 4019741 (+) True G410366
TU471441 lncRNA upstream 216377 3979044 ~ 3979269 (+) True G410359
TU471782 lncRNA downstream 73760 4270315 ~ 4270720 (+) True G410649
TU471792 lncRNA downstream 111015 4307570 ~ 4307813 (+) True G410659
TU471845 lncRNA downstream 208246 4404801 ~ 4407968 (+) True G410710
TU471870 lncRNA downstream 332477 4529032 ~ 4560250 (+) True G410733
TU471915 lncRNA downstream 460215 4656770 ~ 4658791 (+) True G410776
CI01000300_04105718_04107800.mRNA mRNA upstream 87797 4105718 ~ 4107849 (+) True CI01000300_04105718_04107800
CI01000300_04100876_04103178.mRNA mRNA upstream 91231 4100876 ~ 4104415 (+) True CI01000300_04100876_04103178
CI01000300_04054526_04057476.mRNA mRNA upstream 138133 4053498 ~ 4057513 (+) True CI01000300_04054526_04057476
CI01000300_04035454_04049805.mRNA mRNA upstream 145825 4034317 ~ 4049821 (+) True CI01000300_04035454_04049805
CI01000300_04021130_04027987.mRNA mRNA upstream 166037 4019875 ~ 4029609 (+) True CI01000300_04021130_04027987
CI01000300_04211928_04219961.mRNA mRNA downstream 14614 4211169 ~ 4220143 (+) True CI01000300_04211928_04219961
CI01000300_04391216_04429569.mRNA mRNA downstream 194203 4390758 ~ 4430154 (+) True CI01000300_04391216_04429569
CI01000300_04439356_04442462.mRNA mRNA downstream 242663 4439218 ~ 4442690 (+) True CI01000300_04439356_04442462
CI01000300_04443587_04462530.mRNA mRNA downstream 247032 4443587 ~ 4462719 (+) True CI01000300_04443587_04462530
CI01000300_04465330_04479739.mRNA mRNA downstream 268543 4465098 ~ 4481238 (+) True CI01000300_04465330_04479739
TU471472 other upstream 71230 4123698 ~ 4124416 (+) True G410382
TU471334 other upstream 293495 3901950 ~ 3902151 (+) True G410258
TU471035 other upstream 923248 3271685 ~ 3272398 (+) True G409984
TU470056 other upstream 1881752 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU469855 other upstream 2436610 1749900 ~ 1759036 (+) False G408928
TU472695 other downstream 1694512 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754
TU473010 other downstream 2272690 6469245 ~ 6469705 (+) False G411777
TU474898 other downstream 4747928 8944483 ~ 8948603 (+) True G413459
TU475774 other downstream 6173356 10369911 ~ 10373837 (+) False G414249
TU475776 other downstream 6173356 10369911 ~ 10373898 (+) True G414249

Expression Profile