RNA id: TU471441


Basic Information

Item Value
RNA id TU471441
length 226
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G410359
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 3979044 ~ 3979269 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACACTGATGACATTTTGTCCCGTTTGACATCAAAAAGTCTCAATGTTGCAAGATGAGTAAAATTCAGGAATATCATGCAAGTGCTTAATATTCCACTTACAGGCCATCAAAATGATTTGCTTGTTTTAGAAGTATGTCAGGATTAACATGATATTATGGCACGTTAAAAAAAAATCACACTAATTATTCTATACTCCGGGAATGTAGAAGAGAACTAGGCTATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471436 lncRNA upstream 25630 3953176 ~ 3953414 (+) True G410354
TU471435 lncRNA upstream 25999 3952830 ~ 3953045 (+) True G410353
TU471402 lncRNA upstream 39362 3939037 ~ 3939682 (+) True G410323
TU471399 lncRNA upstream 40097 3916761 ~ 3938947 (+) True G410320
TU471427 lncRNA upstream 65051 3911374 ~ 3913993 (+) True G410345
TU471448 lncRNA downstream 40267 4019536 ~ 4019741 (+) True G410366
TU471473 lncRNA downstream 71178 4050447 ~ 4053321 (+) True G410383
TU471452 lncRNA downstream 103749 4083018 ~ 4085182 (+) True G410368
TU471463 lncRNA downstream 147907 4127176 ~ 4129355 (+) True G410375
TU471782 lncRNA downstream 291046 4270315 ~ 4270720 (+) True G410649
CI01000300_03972562_03976190.mRNA mRNA upstream 2819 3972562 ~ 3976225 (+) True CI01000300_03972562_03976190
CI01000300_03954605_03969070.mRNA mRNA upstream 8605 3954605 ~ 3970439 (+) True CI01000300_03954605_03969070
CI01000300_03924558_03934407.mRNA mRNA upstream 43684 3924558 ~ 3935360 (+) True CI01000300_03924558_03934407
CI01000300_03901275_03902800.mRNA mRNA upstream 76152 3901148 ~ 3902892 (+) False CI01000300_03901275_03902800
CI01000300_03773519_03831065.mRNA mRNA upstream 147622 3773362 ~ 3831422 (+) True CI01000300_03773519_03831065
CI01000300_03981015_03991839.mRNA mRNA downstream 1746 3981015 ~ 3992010 (+) True CI01000300_03981015_03991839
CI01000300_03994394_03997804.mRNA mRNA downstream 15125 3994394 ~ 3998763 (+) True CI01000300_03994394_03997804
CI01000300_04008515_04015444.mRNA mRNA downstream 27708 4006977 ~ 4015556 (+) True CI01000300_04008515_04015444
CI01000300_04021130_04027987.mRNA mRNA downstream 40606 4019875 ~ 4029609 (+) True CI01000300_04021130_04027987
CI01000300_04035454_04049805.mRNA mRNA downstream 55048 4034317 ~ 4049821 (+) True CI01000300_04035454_04049805
TU471334 other upstream 76893 3901950 ~ 3902151 (+) True G410258
TU471035 other upstream 706646 3271685 ~ 3272398 (+) True G409984
TU470056 other upstream 1665150 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU469855 other upstream 2220008 1749900 ~ 1759036 (+) False G408928
TU471472 other downstream 144429 4123698 ~ 4124416 (+) True G410382
TU471478 other downstream 216377 4195646 ~ 4196555 (+) True G410388
TU472695 other downstream 1911798 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754
TU473010 other downstream 2489976 6469245 ~ 6469705 (+) False G411777
TU474898 other downstream 4965214 8944483 ~ 8948603 (+) True G413459

Expression Profile