Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019701 |
| length | 1685 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 4 |
| gene id | XLOC_009874 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 22618620 ~ 22678294 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042391 | regulation of membrane potential | biological_process |
| GO:0050877 | nervous system process | biological_process |
| GO:0034220 | ion transmembrane transport | biological_process |
| GO:0007268 | chemical synaptic transmission | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0043005 | neuron projection | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0022848 | acetylcholine-gated cation-selective channel activity | molecular_function |
| GO:0004888 | transmembrane signaling receptor activity | molecular_function |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0005230 | extracellular ligand-gated ion channel activity | molecular_function |
| GO:0030594 | neurotransmitter receptor activity | molecular_function |
| id | description |
|---|---|
| ko04080 | Neuroactive ligand-receptor interaction |
| ko04725 | Cholinergic synapse |
| ko05207 | Chemical carcinogenesis - receptor activation |
| ko05033 | Nicotine addiction |
| ko04040 | Ion channels |
| id | description |
|---|---|
| ZDB-GENE-070821-3 | Predicted to enable neurotransmitter receptor activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in autosomal dominant nocturnal frontal lobe epilepsy and autosomal dominant nocturnal frontal lobe epilepsy 3. Orthologous to human CHRNB2 (cholinergic receptor nicotinic beta 2 subunit). |
| ensembl_id | ENSDART00000143043 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021710 | lncRNA | upstream | 70529 | 22575355 ~ 22579326 (+) | True | XLOC_009872 |
| TCONS_00021926 | lncRNA | upstream | 72701 | 22575143 ~ 22577154 (+) | False | XLOC_009872 |
| TCONS_00021925 | lncRNA | upstream | 320827 | 22327970 ~ 22329028 (+) | True | XLOC_009870 |
| TCONS_00021924 | lncRNA | upstream | 322353 | 22323766 ~ 22327502 (+) | True | XLOC_009869 |
| TCONS_00021923 | lncRNA | upstream | 535919 | 22022533 ~ 22113936 (+) | True | XLOC_009868 |
| TCONS_00021928 | lncRNA | downstream | 21803 | 22695226 ~ 22696496 (+) | True | XLOC_009875 |
| TCONS_00019708 | lncRNA | downstream | 199437 | 22872860 ~ 22876095 (+) | True | XLOC_009877 |
| TCONS_00019712 | lncRNA | downstream | 621263 | 23294686 ~ 23297206 (+) | True | XLOC_009879 |
| TCONS_00021929 | lncRNA | downstream | 1138178 | 23811601 ~ 23821746 (+) | False | XLOC_009891 |
| TCONS_00019740 | lncRNA | downstream | 1240659 | 23914082 ~ 23915127 (+) | True | XLOC_009894 |
| TCONS_00019698 | mRNA | upstream | 46501 | 22587733 ~ 22603354 (+) | True | XLOC_009873 |
| TCONS_00019697 | mRNA | upstream | 46665 | 22587661 ~ 22603190 (+) | False | XLOC_009873 |
| TCONS_00019696 | mRNA | upstream | 288636 | 22345513 ~ 22361219 (+) | True | XLOC_009871 |
| TCONS_00019693 | mRNA | upstream | 711811 | 21918503 ~ 21938044 (+) | True | XLOC_009867 |
| TCONS_00019692 | mRNA | upstream | 711840 | 21917673 ~ 21938015 (+) | False | XLOC_009867 |
| TCONS_00019703 | mRNA | downstream | 88423 | 22761846 ~ 22790881 (+) | True | XLOC_009876 |
| TCONS_00019704 | mRNA | downstream | 190890 | 22864313 ~ 22881338 (+) | False | XLOC_009877 |
| TCONS_00019705 | mRNA | downstream | 191299 | 22864722 ~ 22872525 (+) | False | XLOC_009877 |
| TCONS_00019706 | mRNA | downstream | 192519 | 22865942 ~ 22879192 (+) | False | XLOC_009877 |
| TCONS_00019707 | mRNA | downstream | 192540 | 22865963 ~ 22872178 (+) | False | XLOC_009877 |
| TCONS_00019682 | other | upstream | 946176 | 21699006 ~ 21703679 (+) | False | XLOC_009863 |
| TCONS_00019667 | other | upstream | 1736371 | 20913413 ~ 20913484 (+) | True | XLOC_009854 |
| TCONS_00019658 | other | upstream | 2144990 | 20496773 ~ 20504865 (+) | True | XLOC_009846 |
| TCONS_00019655 | other | upstream | 2345580 | 20296823 ~ 20304275 (+) | True | XLOC_009845 |
| TCONS_00019651 | other | upstream | 2479027 | 20167834 ~ 20170828 (+) | True | XLOC_009843 |
| TCONS_00019718 | other | downstream | 724378 | 23397801 ~ 23399160 (+) | False | XLOC_009882 |
| TCONS_00019728 | other | downstream | 933808 | 23607231 ~ 23607352 (+) | True | XLOC_009889 |
| TCONS_00019735 | other | downstream | 1164497 | 23837920 ~ 23854611 (+) | False | XLOC_009892 |
| TCONS_00019751 | other | downstream | 1287448 | 23960871 ~ 23962929 (+) | False | XLOC_009898 |
| TCONS_00019767 | other | downstream | 1842669 | 24516092 ~ 24517092 (+) | False | XLOC_009904 |
