RNA id: TU488082


Basic Information

Item Value
RNA id TU488082
length 304
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G425052
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11066492 ~ 11072156 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCAATGGCAGCCACTTCATCATCTTTGACCCAGGCGAAGGTGGAGTAATCAGAGGCACTTTTGAAGCCAATCTGCACGCAGAGATATAAATCACCTCTATCCGATCCAGTCCCAGGTTGAGGACTCAAAGTTTTCCAGGATGGTGTAGGTGAATGTGGCATTTTCATCTGCACTCCAGTGTTCCTCCACTGTCAGTGTGACTAGAGGCGTCTCCACCTTTTTTCTCATCTGCATGAAGCGATCAAAGAGAGATACATTATATTTTTGGACTAAATGTCATGTGCACTGAAAGCAGGTTAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487943 lncRNA upstream 935 11064518 ~ 11065557 (+) True G424936
TU487793 lncRNA upstream 215917 10850310 ~ 10850575 (+) True G424794
TU487789 lncRNA upstream 229017 10837185 ~ 10837475 (+) True G424790
TU487539 lncRNA upstream 488239 10532246 ~ 10535441 (+) True G424547
TU487538 lncRNA upstream 522042 10543664 ~ 10543770 (+) True G424547
TU488088 lncRNA downstream 173 11072329 ~ 11072732 (+) True G425058
TU488042 lncRNA downstream 43964 11116120 ~ 11122174 (+) True G425027
TU488103 lncRNA downstream 65233 11137389 ~ 11137708 (+) True G425073
TU488078 lncRNA downstream 120029 11192185 ~ 11209025 (+) True G425048
TU488111 lncRNA downstream 208371 11280527 ~ 11280784 (+) False G425081
CI01000304_11011297_11032025.mRNA mRNA upstream 34406 11009578 ~ 11032086 (+) True CI01000304_11011297_11032025
CI01000304_10927170_10992558.mRNA mRNA upstream 73934 10927170 ~ 10992558 (+) True CI01000304_10927170_10992558
CI01000304_10586097_10589143.mRNA mRNA upstream 476884 10585348 ~ 10589608 (+) True CI01000304_10586097_10589143
CI01000304_10577811_10579298.mRNA mRNA upstream 485955 10577701 ~ 10580537 (+) False CI01000304_10577811_10579298
CI01000304_10555326_10571933.mRNA mRNA upstream 494328 10555216 ~ 10572164 (+) False CI01000304_10555326_10571933
CI01000304_11140964_11155540.mRNA mRNA downstream 68808 11140964 ~ 11155892 (+) True CI01000304_11140964_11155540
CI01000304_11170412_11182604.mRNA mRNA downstream 97710 11169866 ~ 11182641 (+) True CI01000304_11170412_11182604
CI01000304_11215537_11253484.mRNA mRNA downstream 142781 11214937 ~ 11253581 (+) True CI01000304_11215537_11253484
CI01000304_11264394_11268134.mRNA mRNA downstream 192238 11264394 ~ 11268134 (+) True CI01000304_11264394_11268134
CI01000304_11288992_11297645.mRNA mRNA downstream 216836 11288992 ~ 11298149 (+) True CI01000304_11288992_11297645
TU487556 other upstream 510788 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 873597 10189315 ~ 10189404 (+) True G424251
TU487194 other upstream 874694 10188822 ~ 10189404 (+) False G424251
TU487178 other upstream 939170 10120399 ~ 10127322 (+) True G424246
TU486746 other upstream 1500919 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU488854 other downstream 1356549 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other downstream 1356549 12436554 ~ 12436605 (+) True G425718
TU488852 other downstream 1365648 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU489575 other downstream 2484295 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 3257892 14330048 ~ 14330886 (+) True G426312

Expression Profile