RNA id: TU487556


Basic Information

Item Value
RNA id TU487556
length 91
RNA type TUCP
GC content 0.49
exon number 1
gene id G424559
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10555614 ~ 10555704 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATCAGTACACAGCAGCGTCCACACGAGCAACTTACACAATGGACTCCAAAAGACCGAAAACCTTCAAGAGGACTCGCGTCAATAGTAGCACTGAGATACGAGAACTGGACAGAGAAGATGGTGAGGAGATGATCACTGATGCCAACAGAGACACAACGAACCGACATGATGTCAGGACAGAAACAGAGAACTCAGACACCCCAACCCATCGAACACTTCAACACTCAGGAAGTGTTTGTGTGAAGATCAGAAGCTCCAGAGCAGCTGCAGTGTGTTTGGTGCTGCTGTGTGTTCTTCTGCTGACTGCAGTCATAGTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487538 lncRNA upstream 10836 10543664 ~ 10543770 (+) True G424547
TU487534 lncRNA upstream 24485 10523261 ~ 10528247 (+) True G424546
TU487535 lncRNA upstream 24485 10523261 ~ 10525495 (+) False G424546
TU487537 lncRNA upstream 24485 10523261 ~ 10523469 (+) True G424546
TU487561 lncRNA upstream 94618 10459425 ~ 10460668 (+) True CI01000304_10451536_10470518
TU487789 lncRNA downstream 281481 10837185 ~ 10837475 (+) True G424790
TU487793 lncRNA downstream 294606 10850310 ~ 10850575 (+) True G424794
TU487943 lncRNA downstream 508814 11064518 ~ 11065557 (+) True G424936
TU488082 lncRNA downstream 510788 11066492 ~ 11072156 (+) True G425052
TU488088 lncRNA downstream 516625 11072329 ~ 11072732 (+) True G425058
CI01000304_10550477_10551812.mRNA mRNA upstream 2546 10550268 ~ 10552740 (+) True CI01000304_10550477_10551812
CI01000304_10541900_10546151.mRNA mRNA upstream 9077 10540127 ~ 10546209 (+) False CI01000304_10541900_10546151
CI01000304_10528999_10530630.mRNA mRNA upstream 24439 10528492 ~ 10530847 (+) False CI01000304_10528999_10530630
CI01000304_10512196_10516865.mRNA mRNA upstream 38370 10511523 ~ 10516916 (+) True CI01000304_10512196_10516865
CI01000304_10504058_10505899.mRNA mRNA upstream 49270 10502988 ~ 10506016 (+) True CI01000304_10504058_10505899
CI01000304_10577811_10579298.mRNA mRNA downstream 21997 10577701 ~ 10580537 (+) False CI01000304_10577811_10579298
CI01000304_10586097_10589143.mRNA mRNA downstream 29644 10585348 ~ 10589608 (+) True CI01000304_10586097_10589143
CI01000304_10927170_10992558.mRNA mRNA downstream 371466 10927170 ~ 10992558 (+) True CI01000304_10927170_10992558
CI01000304_11011297_11032025.mRNA mRNA downstream 453874 11009578 ~ 11032086 (+) True CI01000304_11011297_11032025
CI01000304_11140964_11155540.mRNA mRNA downstream 585260 11140964 ~ 11155892 (+) True CI01000304_11140964_11155540
TU487195 other upstream 362391 10189315 ~ 10189404 (+) True G424251
TU487194 other upstream 363488 10188822 ~ 10189404 (+) False G424251
TU487178 other upstream 427964 10120399 ~ 10127322 (+) True G424246
TU486746 other upstream 989713 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU486477 other upstream 1605864 8949036 ~ 8949422 (+) True G423614
TU488854 other downstream 1873001 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other downstream 1873001 12436554 ~ 12436605 (+) True G425718
TU488852 other downstream 1882100 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU489575 other downstream 3000747 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 3774344 14330048 ~ 14330886 (+) True G426312

Expression Profile