CI01000304_10451536_10470518 (CD209)


Basic Information

Item Value
gene id CI01000304_10451536_10470518
gene name CD209
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10450410 ~ 10471255 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_10451536_10470518.mRNA
GTATAAAAAGCATTAAAAAATTGGTCAAACAAAACAAAGCTTTAAACCAACCAAAAACACATAGTTCTTATTTATATACGTTTTACTTAACAGATTAATAATACGATTTTTCACAGTATATCTACTTAAGAGACATATAACCCATATGGAGGTGATGACTGAAGCAAAGAGTGCATTTTCAGGAAGATTACCTTTAACGACTGGGAAGTGTAGAACAATGCTTTTCAGTGACATGCTAATTGTTGGGCCTGTCTTTTGCATACAAACATAATGGACCACAAAATGACTTCTGTCACGTCGCTTCAGTTGCTCCGACAATTAAAACCTCAGGTGGGAGAAATTGCTCTGAGAGACGAAGAGAAAGTAAATGACAGAGAGGAGGGAAAAGTTGTTTAGCAACATAATAGTTTTAGCTGGCTTGCCTGCTGAGTTTGGCTTTTCTGAAGTCTCAGAACAAAGCAACCATGATGAAGCATCTTGACAGCCGGTAGTTAGAACCATTCTCTAATATAGAAGAATGTCTGACACTTTGTGCGTTTCTATATCTACTTGATTTAAATGAACCCATGAGTCACATGGCATTGAGCAATTGAATAAAAGAGAAATTAAGAGCATTTGCTTCCCCAAAATTATCATTTGAGTTCATAGAGTCTTCTGTGCAATGATCATCTGACAATGAAATGAGAAATTGTGAAGTTTGCAAAGTATTTTTTCCCCCGATACTGATAAAAAAAAAAAAAAGAGAGAGATACATAACCTCACAACATAATCATTATTTCAGAGTTTTAAATATATATTCAGGCTTCTCATGAGATCTCATGAAATGTGAGATCTCATGAGAAGTAGTGTGATGCTAACATAAAAAAAATGCTGCATAGTCACACTTAAAATGTCACAGCTTTAAGTTCACCAATCCCATCGCAGAATATTGTGACATTTGTGTTCCTACATGTAAGTTCCTTTTTGCATAAATACATGAAATATTACCATAGACAGACATCACGAGTACAAAAGAAAAAAAAAATTCCACCTCAGGGGAGATATTAGTACGTTTTGTAGCTTTGTTTAATCCTTCACATTCACGGTTTGTAGTTAGAAGGTTGTAGTAATCCCAACTGCACTGGAAATGTCTGGGCTTGTGAATGATGGTATGGATAAAGGTTCGATGATGGAATCAGAAGACAGAATAGAGAAGACAGTTGATATCTACGTAAGTGCTGAGGCTGTAAGAGACATGAAACATAAGAAAGACACAGAGGACTTTAACACATCGAAAACCCAAACCCCTCAACACACAGTCATAGTGCTGTGTGTCCAACTCTTTACAAACAACAGCACAAACTACACAGAAGAGACACACCAGCTACTAACTAACATCACCAACCTCACAGATGAGAGAGACCAGCTACTAAACAAGATTACCAACATCACAGAAGAGAGAAATGAGCTACTAACCAACAATACCAACCTGACAAAGGAGAGAGATGAGCTAAAAATAAAAAATAAAAATCTGATCAATGAAAAAGACCAGCTAAGAAACACACTTCAGATTTTTGATAAATTGACGACTTATAAATTCAGTTTTTACTACATATCCAATGAGACGAAGAACTGGAATGAGAGCAGAAGATACTGTACAGAGAAAGGAGCAGATCTGGTCATCATAAACAACAGCGATGAACAAGATTTTGTTAATCACATGTCTGGTGCTGCTGTAGTCTGGATTGGTCTGACTGACAGTGATGTGGAGGGCAGATGGAAATGGGTTGATGGCACCAACATGACCTCTGGGTTCTGGGAGTCACGTTCTAATGAGCCTAATGGAGGTACAAGCGAGAACTGTGCTGTGACTGTGGATAAACAAAACAAAGAATGGCCAAACCATTCCGGGTGGATTGATGTTCAATTTGGTGGTTTGTATGAAACTTTCCAAACAGGTTTAACTTCATCATCTAGTCCCAATTTCTCTCTCCACAATGTGTCAGGCACATGCGTATCACGTGACCCTCTTATCTACAACCAAAACACCTCTTCGACTCTGAGGATTTTGTCTGGTGCTGCTGTAGTCTGGATTGGTCTGACTGACAGTGATGTGGAGGACACATGGAAATGGGTTGATGGCAGCACACTGACCTCTGGGTTCTGGGCGTCTGGAGAGCCTGGTGGAGATAGAACAGAGAACTGTGTTGTGACTGTGGCTGTGCCTATACTCCAAGACTGGCAAAATTTAATAGGATGGCATGATGCTGCATTCATAGTGCTGTGTGTCTACATCCATACAAACAACAGCACAAACTACACAGAAGAGACACACCAGCTACTAACTAACATCACCAACCTCACAGATGAGAGAGACCAGCTACTAAACGAGATTTACAACATCACAAAAGAGAGAGTCCAGCTAATATCCAAGAACGAAAACCTGACCATTGAGAGAGTCTGGCTAAGAAATGTACTTCAAATTTATGCTGGATTGACTTTCTATCAATCCAGTATTTACTACATATTAAAAAGAGAAGAAGAACTGGACTGAGAGCAGAAGATACTGTACAGAGAGAGGAGCAGATCTGATCATCATAAACAACAGAGAGGAACAAGTGAGTGAAAGAAAGAATCAAGTGTGTGTAGTGTGTAGCAGCTAAATGAGAAATTGCCAGATGAAAGCCTGGAGAGCCTGGTGGAGGTACAAGTGAAAACTGTGTTGTGACTGTGGCTGTGCCTAAATTGCCAGAGTGGCCTGGTTTAGTAGGGTGGCTTGATGTTGCATGTAATCAAGCTTATCAATGGATCTGTGAGAAGAATATTTCACAACTCACGCTGCCATAGGAACATTACATATCTTTTTTTATGCGAGTTTAACAGTACAAAACTTCTGTAATAATTGATTATCATCTAAAGCAGTGTTTCTCAACCTTGCTCCTGGAGGACCAACAACTGCACTTTTTGAATGTCTCCTTTGTCCGACACCCATTTCATGTCCTGGATTTTCTTGTAATGAGCTGATGAGTTGAATCAGGTGTGTTTAATTAGGGAGACATACAAAATGTGTAAAATGGGACTCGAAAAGTGTATTCCATTAAACCAGAATTGACTTGCGAGTGACTTCACAGAGTACTCTGCCATATCATGTGAGATTCCAGTCTGAAGGGAGTGAACATCTTCTGCAGCACTTATTTAAAATCACACCTAATTTGTTTTGTTTTATGAGCAGTTTAAGATTTCCTAACTACAGATAAGATGAGATTTTGTAAGATAGGGTAAGAATCCTAA
>TU487561
GCACACTAACCGATGACGCTCCTCACAAGCACCCACAAGCTTTTTCTCTATCTACCTAAACAGCAGAACCACGAAAGATAGATAAAAAGATACTCACTGACGCCATAGAGCTCACTCCAACACACTCCATGCACTCACCTCCAGCATGCACGAGAGAGAGAGAGAGAGTTTATAGTGTGTAGCAGCTAAATGAGAAATGGTCAAATTAAATATGTCGATTGTCTGTTTATGAAATAAATGTGCAACTGTTTGATCTGCTCAGGATTTTGTCTGGTGCTGCTGTAGTCTGGATTGGTCTGACTGACAGTGATGTGGAGGACACATGGAAATGGGTTGATGGCAGCACACTGACCTCTGGTTTCAGGTTCTGGGCGTCTGGAGAGCCTGGTGGAGATAGAACAGAGAACTGTGTTGTGACTGTGGCTGTGCCTATACTCCAAGACTGGCAAAATTTAATAGGATGGCATGATGCTGCATGTAATAAAGCTTTGCAATGGATCTGTGAGAAGAGAATTTCACAACTCTTACTGCCATAGGAACATCATAAATTTTTTTTTACATAAATTTAACAGTACAAAACTTCTGTAATAATTGATTATCATCTAAAGCAGTGTTTTTCAACCTTGTTCTGGAGGACGCTCACCATTGCACATTTTGAATGTCTCCTTTGTCAGACACCATTTCATGTCCTGGAGTTTTTTTTTAATGAGCTGATGAGTTGAGTCAAGGTGTGTTTAATTATGGAAACATACAAAATGTGTAAAATGGGACTCCAGAAGTGTGTTCCATTTGATCAGAAATGACTTGCGAGTGCCTTCTGATTGATTGATCATCTAGTCTTTCCTGCCAGTCTAGTCTTGTATTTTGATTTTTCTAGTTTTTATTTGTCCGTTTTTTTTCTTTTTACTCTATTCATGTTCCAGTCTTTATTTTTGCTCTCTATTCTGCCATATCATGTGAGATTCGAGTCCGAAGGAAGTGAACATCTTCAAATAATATTTGTACATTATTCAGTTCTACATCACCAATCATTGCACATCACTTCAGTACTTTAGAGAAGATTGAATAAAATACAGATGTTAAAAATAAGTCGAAGCTGCGGCATTATTGAGTTCATTCAGTCCCAGGTGTGGCTTCTACATGTTCACTGGTATAAAGTCTG

Function

symbol description
cd209 Acts upstream of or within T cell activation involved in immune response; adaptive immune response; and dendritic cell antigen processing and presentation. Located in cell surface. Is expressed in several structures, including heart; immune system; integument; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Coronavirus infectious disease; aspergillosis; dengue disease (multiple); human immunodeficiency virus infectious disease (multiple); and tuberculosis (multiple). Orthologous to several human genes including CLEC6A (C-type lectin domain containing 6A); CLEC4A (C-type lectin domain family 4 member A); and CLEC4C (C-type lectin domain family 4 member C).

NR:

description
CD209

GO:

id name namespace
GO:0002286 T cell activation involved in immune response biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_10451536_10470518.mRNA False 3270 mRNA 0.39 11 10450410 10471255
TU487561 True 1162 lncRNA 0.39 2 10459425 10460668

Neighbor

gene id symbol gene type direction distance location
CI01000304_10327313_10328936 NA coding upstream 121018 10327261 ~ 10329392 (+)
CI01000304_10316482_10319012 NA coding upstream 131393 10316308 ~ 10319017 (+)
CI01000304_10292429_10311478 LTN1 coding upstream 138682 10292429 ~ 10311728 (+)
CI01000304_10276598_10283032 SLC25A1, SLC25A1-B, SLC25A1A coding upstream 166660 10276598 ~ 10283750 (+)
CI01000304_10256417_10260924 NA coding upstream 189486 10256223 ~ 10260924 (+)
CI01000304_10473174_10473651 NA coding downstream 837 10472092 ~ 10473725 (+)
CI01000304_10489464_10500854 NA coding downstream 18126 10489381 ~ 10501137 (+)
CI01000304_10504058_10505899 NA coding downstream 31733 10502988 ~ 10506016 (+)
CI01000304_10512196_10516865 NA coding downstream 40268 10511523 ~ 10516916 (+)
CI01000304_10528999_10530630 NA coding downstream 57237 10525290 ~ 10530847 (+)
G424376 NA non-coding upstream 197138 10253047 ~ 10253272 (+)
G424366 NA non-coding upstream 207197 10242979 ~ 10243213 (+)
G424351 NA non-coding upstream 229295 10219120 ~ 10221115 (+)
G424248 NA non-coding upstream 233555 10153444 ~ 10216855 (+)
G424337 NA non-coding upstream 297006 10153184 ~ 10153404 (+)
G424547 NA non-coding downstream 60991 10532246 ~ 10543770 (+)
G424790 NA non-coding downstream 365930 10837185 ~ 10837475 (+)
G424794 NA non-coding downstream 379055 10850310 ~ 10850575 (+)
G424936 NA non-coding downstream 593263 11064518 ~ 11065557 (+)
G424251 NA other upstream 257515 10188822 ~ 10189404 (+)
G424246 NA other upstream 323088 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 884837 9561005 ~ 9565778 (+)
G423614 NA other upstream 1500988 8949036 ~ 8949422 (+)
CI01000304_08671901_08672203 NA other upstream 1777855 8671770 ~ 8672555 (+)
CI01000304_10555326_10571933 NA other downstream 84031 10555216 ~ 10572164 (+)
G425718 NA other downstream 1957450 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 3085196 13578049 ~ 13595097 (+)
G426312 NA other downstream 3858793 14330048 ~ 14330886 (+)
G426828 NA other downstream 4477635 14948890 ~ 14950592 (+)

Expression


Co-expression Network