G424351


Basic Information

Item Value
gene id G424351
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10219120 ~ 10221115 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU487310
TGCAGGATCATACAGTAAAAAAGAAAATTAAATGGAATATTTAAAAAAAAAAATCTTAAAAGGTTTAATGACTAAAATGTCAAGTTACCATCAAGTAAATTTTACACTATCAACAAAATGGCTAAAAGATTATGAAAAAATACTTATGCCAACATTTCTTTTCTAGCAATATTGGCCTTTTAATGAGACCAAATTCTTTTTTACAATCTTTGGAGATACCTATAGACAGAAAAAAGGAGTATTATGTCATTGACCCATTTATGTACATATGTATATAGGTCAGTTAGGGCAAATTTTCCCCATAATGAATTTTATTAATTAATTAATTTATTTTTAGTCAGGATCTATTAAGTGAAGCTAGTGTATTACTCATGGAGTTCATGCAGCTTGTATGCTGTCAGTAAAGCAAAAGAAAAATATAAGATTTTCAAATCAAATGTTTCAATTTAACTTCAGTCAATGCTATTATTTTATTTCTTATATTTGTTATGCTAATAATAAAGGAAAAATATAACACACACCCACCGGCCACTCTATTAGGTACACCTTGCTAGTATAAGGTTGGACACCATTTTGCCTTCAGAACTGCCTTAATTCTTTGTGGCATAAATTCAACCAGGTGGTGAAAACATTCCTCAAAGATTCTGGTCCATATTGACATGCCTAAATGCACTGAGTAGATGCCACATGATTGCCTTATTAGATATTTGCATCATGGAGCAGCTGAACAGGTGTACCTAATAAAGTGGCCAGTGAGTGTATATTAACTTTGATCGCTACATTTTTGTATAATTAAGAATTATTACAAGAATTTTCTTCATTCAGTTTTCCTACGAAAAGAAAGCATCTCAGATATGACAGCAAAACGGTAATGCAATTCATTTGTCCTCAAACTAGCTAAACTCAATCAGTCTGTTCTGGTGAAGCTTCCAAAAGCTCCCACTGTGTGGCATCAATGAGCCTATAGTTGATCTGTCTGTATTTCTGTGGGTCTTTCTTCCTCTGCCTGCCCACCTCTTCATATAGACTCTTAAACACTGGCTGAGGGGGTGTGAATTGGGCTACCCTGGCCAGATCCAGGTAATAATCCCACTGATCCTTGTCCAAATTGAGCAAGTGCTTCACCTGCACACCTGTGTCTAGTTTTTTTTGCATCTCTCTCCGCACCTCCTTCTCCATCTCTTCCTGAGTGGGCAGCTTTACCGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU487310 True 1207 lncRNA 0.35 2 10219120 10221115

Neighbor

gene id symbol gene type direction distance location
CI01000304_10192819_10195110 CLG07H17ORF49, CSSA04H17ORF49 coding upstream 24010 10190564 ~ 10195110 (+)
CI01000304_10189588_10190707 MED11 coding upstream 28143 10189588 ~ 10191798 (+)
CI01000304_10177319_10186557 ARRB2.L, ARRB2A, ARRB2, ARRB2B coding upstream 32455 10177319 ~ 10186665 (+)
CI01000304_10172353_10175399 AP4M1 coding upstream 43426 10172353 ~ 10175694 (+)
CI01000304_10112119_10114490 TMEM88A coding upstream 104294 10109978 ~ 10114826 (+)
CI01000304_10256417_10260924 NA coding downstream 35108 10256223 ~ 10260924 (+)
CI01000304_10276598_10283032 SLC25A1, SLC25A1-B, SLC25A1A coding downstream 55483 10276598 ~ 10283750 (+)
CI01000304_10292429_10311478 LTN1 coding downstream 71314 10292429 ~ 10311728 (+)
CI01000304_10316482_10319012 NA coding downstream 95193 10316308 ~ 10319017 (+)
CI01000304_10327313_10328936 NA coding downstream 106146 10327261 ~ 10329392 (+)
G424248 NA non-coding upstream 2265 10153444 ~ 10216855 (+)
G424337 NA non-coding upstream 65716 10153184 ~ 10153404 (+)
G424336 NA non-coding upstream 66579 10152227 ~ 10152541 (+)
G424334 NA non-coding upstream 69122 10148454 ~ 10149998 (+)
G424257 NA non-coding upstream 81479 10135492 ~ 10137641 (+)
G424366 NA non-coding downstream 21864 10242979 ~ 10243213 (+)
G424376 NA non-coding downstream 31932 10253047 ~ 10253272 (+)
CI01000304_10451536_10470518 CD209 non-coding downstream 238310 10450410 ~ 10471255 (+)
CI01000304_10528999_10530630 NA non-coding downstream 302146 10525290 ~ 10530847 (+)
G424547 NA non-coding downstream 311131 10532246 ~ 10543770 (+)
G424251 NA other upstream 26225 10188822 ~ 10189404 (+)
G424246 NA other upstream 91798 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 653547 9561005 ~ 9565778 (+)
G423614 NA other upstream 1269698 8949036 ~ 8949422 (+)
CI01000304_08671901_08672203 NA other upstream 1546565 8671770 ~ 8672555 (+)
CI01000304_10555326_10571933 NA other downstream 334171 10555216 ~ 10572164 (+)
G425718 NA other downstream 2207590 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 3335336 13578049 ~ 13595097 (+)
G426312 NA other downstream 4108933 14330048 ~ 14330886 (+)
G426828 NA other downstream 4727775 14948890 ~ 14950592 (+)

Expression


Co-expression Network