CI01000304_10172353_10175399 (AP4M1)


Basic Information

Item Value
gene id CI01000304_10172353_10175399
gene name AP4M1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10172353 ~ 10175694 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_10172353_10175399.mRNA
TCCGAGGAGAGGCCAGTAAAGACTCCATCAATGTATTCTATGAGATGGTCACAGCACTTAGTGGAGATCAGCCTCCAGTTGTCATGATGTTGATCTTGTTGCAGACACACAAAGATCATCAATTCATCCACATAAGGCAGGGTGGGCTGTACTGGGTGGCGTCCACCAAGACAAACCCATCCCCTTTTACCATAATTGAGTTCCTCAACAGATTAGCAGCTCTTACAAAGGACTACTGCGGCAGTTTGTCTGAGAAATCAGTGCGGATGAATTTCGCTCTAATTTATGAGCTGCTGGATGAGATGGTGGACTTTGGCTACATACAGACGACCTCAACTGACATACTGAAAAACTTCATCCAGACAGAAGCTGTGTCATCCAAACCCTTTAGTCTCTTTGACCTCAGTAATGTTGGTTTGTTTGGGGCTGAGACACAACAGAGTAAAGTGGCCCCTAGTGTTGCAGCCAGTCGTCCAATAATGTCCAGTCGAGGAGAGCAGGGTGGAAAGAATGAGATCTTTGTGGATGTGATAGAGAGGTTGTCTGTAGTTATTGGCTCCAATGGAGTTTTAATGAAAGCAGATATTCAGGGAGAGATAAGAATAAAATGCTTTCTTCCAACCTGTTCAGAGATGCGGATTGGTCTGAACGAAGAGCTCAATATTGGAAAGTCCCAGCTGAAAGGTTATAGTTCAGCTGTGCGTGTAGATGAATGCAGATTCCACCAGGCTGTTAAACTGGACGAATTTGATACTTTCAGAATATTGAAAGTTTGTCCCAGCCAAGGAGAGCAAACAGTGATGCAGTATCAGCTGTGTGATGAGCTGCCGTGTGCACCACCATTTCAGTTATTCCCCTCTGTAGAGAAGGATTATGTCAACAGGGTGTTGATCTTTCTTAAACTTCGCTGTGATCTTCCACCTAAAAGTACGGCCCTTAACGTTTCCATCACCGTGCCTGTGCCAAAAGGCTCTGTAAGTATGTCTCAGGAGCTCAGCAGTCCTGACCAGACCGCGGAACTACAGCCAAAGAACAAAGCCCTGCTCTGGGAGATTCCACGTTTTCCAGGAGGAGCGCAGTTGTCGGCACTGTTCAAGGTGGATGTACCTGGTCTAAGCTCTGCCTCTTTACTGGAGGTCGGCCCTGTCAGTATGTCATTCGAACTGCCCAAACAAACCTGCACGGGCCTTCAGATCCGCTTCCTCCGACTCTCTCCAACTCAGACAGGACTGTCACAACGTTGGGTTCGATATGTCACTCATTCTGACTCCTACACCATACGGATCTGACCCAACCAGATGGAACAAACATTTAATATGTACAGCACATCACTAAGCATTGAACAAACCACTTTGTACCTCACCCATCCACAGAAGTTTTTTTTTAATTATTATTATTATTTTGTTAGGAAATCTGAGATAATCTATGCATATGAACAAATTTACAGGTTTGATCCTTTTATTTTTTGATTTTAGAGAAAGTGAACCAGGAGATCTTTGGAGATACAACCATATTTTGTCCAGAATAACTGTCAAAAAAGTGTCATCTCTATGCAACACTGTCCGTTCCTGCGTTTTCAGTCAA

Function

symbol description
ap4m1 Predicted to be involved in Golgi to lysosome transport and protein targeting. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in Golgi apparatus; early endosome; and membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in cytoplasmic vesicle and trans-Golgi network. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 50. Orthologous to human AP4M1 (adaptor related protein complex 4 subunit mu 1).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12402 AP4M1; AP-4 complex subunit mu-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_10172353_10175399.mRNA True 1584 mRNA 0.44 14 10172353 10175694

Neighbor

gene id symbol gene type direction distance location
CI01000304_10112119_10114490 TMEM88A coding upstream 57527 10109978 ~ 10114826 (+)
CI01000304_10093597_10099497 KDM6BA, KDM6BB, KDM6B coding upstream 72856 10093597 ~ 10099497 (+)
CI01000304_09976509_10020020 EFNB3A coding upstream 151778 9976509 ~ 10020575 (+)
CI01000304_09961620_09975855 GIGYF1 coding upstream 196483 9961620 ~ 9975870 (+)
CI01000304_09879900_09938234 NLGN2, NLGN2A, NLGN2B coding upstream 233032 9879854 ~ 9939321 (+)
CI01000304_10177319_10186557 ARRB2.L, ARRB2A, ARRB2, ARRB2B coding downstream 1625 10177319 ~ 10186665 (+)
CI01000304_10189588_10190707 MED11 coding downstream 13894 10189588 ~ 10191798 (+)
CI01000304_10192819_10195110 CLG07H17ORF49, CSSA04H17ORF49 coding downstream 17062 10190564 ~ 10195110 (+)
CI01000304_10256417_10260924 NA coding downstream 80529 10256223 ~ 10260924 (+)
CI01000304_10276598_10283032 SLC25A1, SLC25A1-B, SLC25A1A coding downstream 100904 10276598 ~ 10283750 (+)
G424337 NA non-coding upstream 18949 10153184 ~ 10153404 (+)
G424336 NA non-coding upstream 19812 10152227 ~ 10152541 (+)
G424334 NA non-coding upstream 22355 10148454 ~ 10149998 (+)
G424257 NA non-coding upstream 34712 10135492 ~ 10137641 (+)
G424246 NA non-coding upstream 50909 10116343 ~ 10127322 (+)
G424351 NA non-coding downstream 43426 10219120 ~ 10221115 (+)
G424366 NA non-coding downstream 67285 10242979 ~ 10243213 (+)
G424376 NA non-coding downstream 77353 10253047 ~ 10253272 (+)
CI01000304_10451536_10470518 CD209 non-coding downstream 283731 10450410 ~ 10471255 (+)
CI01000304_10528999_10530630 NA non-coding downstream 347567 10525290 ~ 10530847 (+)
CI01000304_09564068_09565679 HRH2B other upstream 606780 9561005 ~ 9565778 (+)
G423614 NA other upstream 1222931 8949036 ~ 8949422 (+)
CI01000304_08671901_08672203 NA other upstream 1499798 8671770 ~ 8672555 (+)
CI01000304_08232073_08235598 NA other upstream 1937393 8231293 ~ 8235655 (+)
G424251 NA other downstream 13128 10188822 ~ 10189404 (+)
CI01000304_10555326_10571933 NA other downstream 379592 10555216 ~ 10572164 (+)
G425718 NA other downstream 2253011 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 3380757 13578049 ~ 13595097 (+)
G426312 NA other downstream 4154354 14330048 ~ 14330886 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002112 ap4m1 coding NC_007121.7 CM002894.2 22854803 ~ 22862078 (+)