CI01000304_10276598_10283032 (SLC25A1, SLC25A1-B, SLC25A1A)


Basic Information

Item Value
gene id CI01000304_10276598_10283032
gene name SLC25A1, SLC25A1-B, SLC25A1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10276598 ~ 10283750 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_10276598_10283032.mRNA
GGACCGTGCAAAGATGCGATACTGAGACGAGGATGCACACCGCAACAGCATCCTGCAACGCTGACCCGGATTCCCTCCGCTGGCGGGGGCTCGACGCGCACTTTTACCCCAATTCCCAACATTTATCCAGGCCAGAGAAATCTAGCGGCCGCTGCAATCGGAGGGAGAAAAATCACCCATCCGTGGAAGGCTATTCTTGCAGGTGGCATTGCAGGAGGCATTGAGATCTGCATCACATTCCCAACGGAGTATGTGAAGACCCAACTACAGTTAGATGAAAGAGCAAACCCTCCTCGGTACCGAGGCATAGGTGACTGTGTTAAGCTGACAGTGCAAGATCATGGGTTGAGAGGTCTATATAGAGGGCTTAGTTCACTGCTTTATGGATCCATCCCAAAATCTGCAGTACGGTTTGGAACATTCGAGGTTCTTAGTAACCCGATGAGGGACGCCACAGGTCGGCTTGACAATAAAGGAAGTTTATTGTGTGGGCTTGGAGCAGGAATTGCAGAGGCGGTGTTGGTGGTCTGTCCAATGGAGACAGTCAAGGTGAAGTTCATTCATGACCAGTGCTCTCTGAGGCCACGTTACCGAGGGTTCTTCCACGGCGTACGGGAAATCATCAGAGATCAAGGTGTTCGAGGGACATATCAAGGACTGACTGCTACACTTCTGAAGCAGGGTAGCAACCAGGCGATACGCTTTTATGTTATGAACTTGTTGCGCAACTGGTACAAAGGTGATGACCCCGGTCGTGACATGCACCCACTGGTTACAGCGATGTTCGGAGCGACAGCCGGGGCGGCGAGTGTTTTTGGGAACACGCCCCTTGATGTGGTGAAGACTCGAATGCAGGTTTTACAAAGGCACAGTCCCACGATTGGGCCGAGTGTGTCTGGACGTGGCCATTGTCTTTGTTCTCTACGAAGAAGTCGTGAAGCTACTGAACAACGTCTGGAGAACGGACTGAAGATGGACCAGGGTGCAGAACTGATCGAGACAGACTGAACTATCCAAACACAGTTGGCCATGTCAATCAAGTTTAAAGATCCAGACTTGAACTGTGACCTCTGGCCCAGAGGATTTAAACCATGTGTCTGTGTCTGTATAGTTGAAGCCAGGAACTTGAGCCTTGAGAAGGAACTTGTAGCTTACAGTATATTTATTGATGCACAAAAATATTGATGAATGAAAAGCATATCATCAATTTGCACTCTTCGGTAAAATCGTGCAAGTGTTTTCTCACCACCGCCATGCTTTTATAGAGGTTGTCGTGAGACAATCCATTCATGTGGCATGAAAACAAAATAGCACAACCAAGTACGCAGAAACATCAATGTAATGCACATGTTCTTTTGCCCTAGTTTACATGTACAGTTACACTGGAAATGGTTTAAATGTGCTTAAATGTGAGAACTTGTATCTTGATGTTGTCATACATCTAAAAACTGGTAGAGGCCAAGACGTTCCTGTTGATATTAAATTTGCATGCGTGAATGGCATCAAGACCAGGATGTTCAAGCTCGATTACCGAGTCAATACAACTCTCATGTTTTGTGTTTTTTTTATAAAATGTAAATGGAAGCTTTTTTAGTTGCACAATTTGTTTATAAGCTATTTTAGTCATTAACAAGGTTGCCTGTTCTGCACTAGTTACGCTACTTTTGTGTCCGATATATAAGCAGTGCTTCTTCGAAACAGATTCTGAATACGTCACACATATTCA

Function

symbol description
slc25a1a Involved in neuromuscular junction development. Acts upstream of or within regulation of mitochondrion organization. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in 2-hydroxyglutaric aciduria; combined D-2- and L-2-hydroxyglutaric aciduria; and congenital myasthenic syndrome. Orthologous to human SLC25A1 (solute carrier family 25 member 1).
slc25a1 Enables citrate secondary active transmembrane transporter activity. Predicted to be involved in mitochondrial citrate transmembrane transport. Located in extracellular exosome and nucleus. Implicated in 2-hydroxyglutaric aciduria; combined D-2- and L-2-hydroxyglutaric aciduria; and congenital myasthenic syndrome.

GO:

id name namespace
GO:0006843 mitochondrial citrate transmembrane transport biological_process

KEGG:

id description
K15100 SLC25A1, CTP; solute carrier family 25 (mitochondrial citrate transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_10276598_10283032.mRNA True 1726 mRNA 0.46 8 10276598 10283750

Neighbor

gene id symbol gene type direction distance location
CI01000304_10256417_10260924 NA coding upstream 15674 10256223 ~ 10260924 (+)
CI01000304_10192819_10195110 CLG07H17ORF49, CSSA04H17ORF49 coding upstream 81488 10190564 ~ 10195110 (+)
CI01000304_10189588_10190707 MED11 coding upstream 85621 10189588 ~ 10191798 (+)
CI01000304_10177319_10186557 ARRB2.L, ARRB2A, ARRB2, ARRB2B coding upstream 89933 10177319 ~ 10186665 (+)
CI01000304_10172353_10175399 AP4M1 coding upstream 100904 10172353 ~ 10175694 (+)
CI01000304_10292429_10311478 LTN1 coding downstream 8679 10292429 ~ 10311728 (+)
CI01000304_10316482_10319012 NA coding downstream 32558 10316308 ~ 10319017 (+)
CI01000304_10327313_10328936 NA coding downstream 43511 10327261 ~ 10329392 (+)
CI01000304_10451536_10470518 CD209 coding downstream 166660 10450410 ~ 10471255 (+)
CI01000304_10473174_10473651 NA coding downstream 188342 10472092 ~ 10473725 (+)
G424376 NA non-coding upstream 23326 10253047 ~ 10253272 (+)
G424366 NA non-coding upstream 33385 10242979 ~ 10243213 (+)
G424351 NA non-coding upstream 55483 10219120 ~ 10221115 (+)
G424248 NA non-coding upstream 59743 10153444 ~ 10216855 (+)
G424337 NA non-coding upstream 123194 10153184 ~ 10153404 (+)
CI01000304_10528999_10530630 NA non-coding downstream 239511 10525290 ~ 10530847 (+)
G424547 NA non-coding downstream 248496 10532246 ~ 10543770 (+)
G424790 NA non-coding downstream 553435 10837185 ~ 10837475 (+)
G424794 NA non-coding downstream 566560 10850310 ~ 10850575 (+)
G424251 NA other upstream 83703 10188822 ~ 10189404 (+)
G424246 NA other upstream 149276 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 711025 9561005 ~ 9565778 (+)
G423614 NA other upstream 1327176 8949036 ~ 8949422 (+)
CI01000304_08671901_08672203 NA other upstream 1604043 8671770 ~ 8672555 (+)
CI01000304_10555326_10571933 NA other downstream 271536 10555216 ~ 10572164 (+)
G425718 NA other downstream 2144955 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 3272701 13578049 ~ 13595097 (+)
G426312 NA other downstream 4046298 14330048 ~ 14330886 (+)
G426828 NA other downstream 4665140 14948890 ~ 14950592 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002120 slc25a1a coding NC_007121.7 CM002894.2 23060391 ~ 23069323 (+)