XLOC_002120 (slc25a1a)


Basic Information

Item Value
gene id XLOC_002120
gene name slc25a1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23060391 ~ 23069323 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004114
CACGCCCCGGAGTGGTCTTCCTCTGATAGCGCGATTGTGTTGTCTCCGTCCGATTGGACAGACGCATCCAGCGCGGCGGCACACACTACAGATTTCCACACTGTACGCTCAAAACATCAGCAAACATGTCGTCTTTGTATAAACCGTTTTGTGTTTCGGAAGGGCCGTGCAAAGATGCGATACTGAGACGAGGATGCGCGCCGCTACAGCATCCTGCGGCGCCGACCCGGATTCCCTCCCCTGGCGGTGGCTCGACGCGCACTTTTACCCCAATTCCTAACATTTATCCGGGCCAAAGGACTCTAGCGGCCGCTGCCATCGGAGGAAGAAAGATCACGCATCCGTGGAAGGCTATTTTCGCAGGTGGCATTGCAGGAGGCATTGAGATCTGCATCACATTCCCCACGGAGTATGTGAAGACCCAGCTACAGTTAGACGAGCGAGCCAATCCTCCTCGATACAGAGGCATTGGTGACTGTGTTAAGCTGACGGTGCAGTATCATGGCTTGAGAGGTCTGTACAGAGGGCTTAGTTCACTGCTTTATGGGTCCATCCCAAAATCTGCAGTACGGTTTGGGACATTCGAGGTTTTGAGTAACCCAATGCGGGACGCCACGGGTCGGCTTGATAATAAAGCAAGTTTGCTGTGTGGACTCGGAGCAGGAATTGCAGAGGCGGTGTTGGTGGTTTGTCCAATGGAAACAGTTAAGGTGAAGTTCATTCATGACCAGTGCTCTCTGAGGCCACGTTATCGAGGGTTTTTTCATGGCGTAAGGGAAATCATTAGAGATCAAGGTGTTCGAGGGACATATCAAGGCCTGACTGCTACACTTCTGAAGCAGGGTAGCAACCAAGCGATACGCTTTTATGTTATGAATTTGTTGCGGAATTGGTACAAAGGTGATGACCCTGCTCGTGACATGCACCCACTGGTTACTGCCATGTTTGGAGCAACAGCAGGAGCAGCGAGTGTTTTTGGGAACACACCACTTGATGTGGTGAAGACTCGGATGCAGgGATTGGAGGCTCATCGCTACAAGAGCACGATGGATTGTGCATTCCAGATTTTGAAGAATGAAGGCCCGCTAGCGTTCTACAAAGGCACAGTTCCTAGACTGGGCCGAGTGTGTTTAGACGTGGCCATTGTCTTTGTTCTGTACGAGGAGGTTGTGAAGCTACTCAACAACGTCTGGAGAACAGACTGAAGATGAACAAATGCGCAGACAGAGACTGAACTATCCAAACACAGTCGGCCATGTCAGTCAAGTCTAAGATCCAGACTTTGAACCGTGACCTCTGGCCCAGTGGatttaatccatccatctgtgtCTGTATAGTTGAAGCCAGGAGCTTGAGCCATGAGAACGAACCATGTAGCTTACACTATATTTATTTGCGCACAAAAACATACAGAGCGTGTCATCAGTTTGCACTCGTCAGTACAATCGTGCAAGTGTCTTCTTTCTCACCAACATGCTTTTTATAGAGGAAGTCGTGAGATAGTTGATGTATGTGGCATGAAAACTAGCACAACCAAATCCGCAGAAACATTGAAGTATTAATGTAACGCACATGTTCCTTTGTCTTAGTTTACACTGGAAACAATGGTATTGTGCTTTGATATATCTTGATGTTACACATCTCATGCCCAGTCATTCGTGTCCATATAAAAGTTGCATGCACGAATGGCATCATCAAGACAAGGTCAGATTTATGTTTTGTGTtccttttgttttataaaataaaatggcagCTTTTTATTAGTAGCTCAATTTTTTATAAGCTTTTTATGTCATTGATTTCGCACAAAGGATGCCTATTCTGTACGAGTTGCGCTATTTTTGTCTGTCTGATATGTATGCTTCAAAACTGAATACgtcacacagatttaataaaccaAATAGGTTCA

Function

symbol description
slc25a1a Involved in neuromuscular junction development. Acts upstream of or within regulation of mitochondrion organization. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in 2-hydroxyglutaric aciduria; combined D-2- and L-2-hydroxyglutaric aciduria; and congenital myasthenic syndrome. Orthologous to human SLC25A1 (solute carrier family 25 member 1).

GO:

id name namespace
GO:0007528 neuromuscular junction development biological_process
GO:0010821 regulation of mitochondrion organization biological_process
GO:0006843 mitochondrial citrate transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1172 Involved in neuromuscular junction development. Acts upstream of or within regulation of mitochondrion organization. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in 2-hydroxyglutaric aciduria; combined D-2- and L-2-hydroxyglutaric aciduria; and congenital myasthenic syndrome. Orthologous to human SLC25A1 (solute carrier family 25 member 1).

Ensembl:

ensembl_id ENSDARG00000057110

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004114 True 1909 mRNA 0.47 9 23060391 23069323

Neighbor

gene id symbol gene type direction distance location
XLOC_002119 NA coding upstream 21101 23034329 ~ 23039290 (+)
XLOC_002118 si:dkey-175g6.2 coding upstream 33862 23022263 ~ 23026529 (+)
XLOC_002117 NA coding upstream 94965 22960289 ~ 22965426 (+)
XLOC_002116 FP102052.2 coding upstream 104021 22938231 ~ 22956370 (+)
XLOC_002115 zgc:103508 coding upstream 134352 22918338 ~ 22926039 (+)
XLOC_002121 LTN1 coding downstream 30042 23099365 ~ 23215879 (+)
XLOC_002122 CT827808.1 coding downstream 348510 23417833 ~ 23417947 (+)
XLOC_002123 si:ch73-122g19.1 coding downstream 372165 23441488 ~ 23443074 (+)
XLOC_002124 si:dkey-181c13.1 coding downstream 432703 23502026 ~ 23505767 (+)
XLOC_002125 zmp:0000000924 coding downstream 442493 23511816 ~ 23519898 (+)
XLOC_002111 AL807389.1 non-coding upstream 212987 22847272 ~ 22847404 (+)
XLOC_002110 NA non-coding upstream 221910 22834311 ~ 22838481 (+)
XLOC_002128 NA non-coding downstream 473294 23542617 ~ 23544066 (+)
XLOC_002131 NA non-coding downstream 519352 23588675 ~ 23591058 (+)
XLOC_002132 NA non-coding downstream 913984 23983307 ~ 23992917 (+)
XLOC_002134 NA non-coding downstream 1026916 24096239 ~ 24096470 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_10276598_10283032 SLC25A1, SLC25A1-B, SLC25A1A coding CI01000304 null 10276598 ~ 10283750 (+)
mexican tetra (Astyanax mexicanus) G179320 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 non-coding NC_035916.1 CM008319.1 26794403 ~ 26799202 (+)