RNA id: TCONS_00019733


Basic Information

Item Value
RNA id TCONS_00019733
length 3661
RNA type mRNA
GC content 0.43
exon number 16
gene id XLOC_009892
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23837847 ~ 23977525 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTTATTTCTGCCttaggacttttatttttatacgGAAGTTTATTACGTCGCATATGAAGATGTAAAAGTGGCGCGCCAGTTCGTCGGTATCTTAGGATAAGACAAGTCACTTCCATATTTCATAGTAAACACAAGTATTGAAATGTGGAAACTGCAGCCAACCGAATCTGGAGGGGAAAGTGTCATTCTGCTGGCTGGACAGGAGTATGTGGTTGGCCGTAAGAATTGTGAGATCCTGCTGACCAATGATCAGTCCATCAGCCGTGTTCATGCTGTCCTCACTGTCACTGAGCAGGCAGTCACTCTGAAGGACAGCTCTAAATATGGAACTTTTGTCAATGGTGAGAAGCTTGAGTCTGGCTCCACAAAGACCTTGCAGACGGGATACAAAATCACATTTGGAGTCTTCCAGAGCAAATTCAGTCTGGAGAAAGAGTGTATTGTGGTTTGCTCCTCGTGTGTGGATAATGAAGGGAAAGTCACCCTGTCTCAAGATATTCGCTCTGTTGGAGGACGACTTGTCAGTTCCTGGACCTCTGACTGCACACATCTAGTCATGCCCACTGTAAAAGTCAccataaagACGATCTGTGCGTTGCTGTGCTGTCGACCCATAGTAAAACCTGCGTTCTTCAGTGCGCTTAGCAAAGCTGTGCAGCAGAAACTGCCACTGCCTAAAGCTGAGAGATTTAGGCCTCAAATTGATGAGCCCAGCCTGGCTAGAGATGATGTGGATCTGAGTGCACGACCTGAGAGAAAGAGCCTCTTCAAGGGGAAAACATTCCTGTTTTTGAGCTCTAAACAgATGAAGCGTTTGAGTGTGGCAGTGAGTTGTGGTGGTGGTGTGAGTCAGCTGCTGGACGAGGGCGCTCTGCCTGTCTCACTCCTGGAGTCCAGCAGCACATGTGTGCTCGACATGATCTCAGGAAACTCACAGCCTGTGATTTCTCCAGCCTCCAAGAAGTGGTTGGATTCTGTGGGCCAAATTCTGCACAGAAAAGGTTTGCGCTTTATCACTGAATCTGAGGTTGGATTGGCTGCCATTCATGTCAGTAATCAGACATACTGCAATCCCTGCTCTTCTTTGCAATCAGAATCAGTGAAAACGAATCCAGTCTTTGCCTCAGCAACACTTTCTCAGAGCACGGCTGTGGATGAGACTGCGCTCGCGGCTCCTTCCCAGAATATCACAGCCTATGTCGtcaacactgaaatctcacaggaCCAAAGCAGGATGGTTACAAGTGGGATCAGTGCAGTTGGAGAGACCCCAGAGAAAACCAATCCCACACAGAAAGCCTCAACAACCAATAAACCCTTATCCCTTGGTCAGGAACCTTCCTCTACCCGCATCGTCCAAGAAACAGTGATGTCCTCTGAGAGCTTCAGTGTGGTTGAATCTGAACAGAAGATGAAGAAAGGGTCTGTTGTCTCAGCCAGGGGAAGAGTTGAAGGTCCTGTAAAACAGAAAGCGCCTTCCAGTGGCAACACCACATTAAAACATTCTCCCCAGAAACAGACAGCCCTCACCAGCTTCTTCCAGCCTTCCAGCAAGAAAAGGCCGCGTGAAAGCAGTGCCAGTTCTGTCCAGCCAGAGCCCAAATTCTTCAAGAAAGACATCAAAGATAATGAAGATGACATCCAGCAAAGTTTTTCTGTCAATAGATCTCACAAAACCTCATCAGAGGAGACCAGTCTAGGTCAGGCTTGTGGAACTGGTCAAAACTCTAGCAGCAAGAAAAGAAAGGAACCTGAGCAGGACACCCTATTAGGCGCAGAAGAACCAACAGCTGCTGATGATTTAGAAATGTCACTTGAAGAGCTTGAATTCTTAATGTCCGACGAGATGGATGAGCCTCCGCAGACTGCAGCTAATAAAAAACAACGTCTTGAGTCAGGACTGACTAGCAAAATCAATAGCGAACAATTATCAAATCAGCAAGAGGTCACTGAGTCTAAAGGCAGGAAAGGGGAGAAGAATCAGCAAAGCAGTTCCAGCAATATTCAGAGCATGCAGTTGGACAGAGCAGGACCAGCTGTAACAAATcaggacacacaaacacagtcaaaGAGGTCACCTCCAGATCTGGAAGCACATAGTTCTGCAAACAAGGGGccctcaaaaaacaaaacacccgagCTTGAAGAGGTCAAAAAGGAGGAAGTGTCCTTTGTTGTGaatTCAAGGCCCCAAAATGGCATTTCCCAGACCTCTGAGGCTGTTCTCAAACAGGAAATGCAGGCCTCAACCTCCAATTCCGGACCTAAGAATGACCCCGATCTGCCCAGGAAGCTACTGCAGGTTCAGTTTATGTCTCTAACAGTGAACAACTCTTCCAGATCAAGACCAGGCCCATTACAGACACACAATCCAAATGACAAGAACGTCAAAAGATTTCGCAAGAAAAATGTCCCTGGATTTGATGGGCTGCCTAAGATAATTGGAGGCTCGGATCTGGTGGCTCATAATCGCAGTAAGCACTCTGAACTAGAGGAATGGCTGAGACAGGCAGCAGAGGAGGAGAAGCTGAACGAACGAGAGGAGACTTTGGGAGACGATTTGTTCAGGTACAACCCAAAACATTGCTGTTAAATGTAATCCATTCGGACCAAATGTAATACATTGGCTCATTTTGCAACAACATCAACTAGCATTAAATTGTCTGCTAACTACTACCTGCTAAAGCTTTATTTTGACTGTCAGACTATCCTACTAATCCTCACatgaaaataaatcaatgctTTACTAGAGTAAACTGAAATGTAGTTGCAGTGATATGAACAGTCGACAGAATGTCTAAACAAGAATATTAAATGTGTAAAAGTGTAAaccaataaatacatacattcgTTTAGTATTTGAACGTGGTGTTCTATATTTTGTTTTCCgccagtgtttgtttttgtgttacaGAGGCACAAAGGCTAAAGTTCTAGATGTTGGCAAGACAGTGGCTGGTTATGCTGGCATGTACTATGAGGATCATCTAAAACCCGTTACCGACTCTTACATGGATTGGGCCAAAGACAGTACAAGTTCCCTGTGGCAAAGACTGAAAAACAGATTGCCTACTCTTGGATCAGATTCAGATGAATAAACAGAACAGATATTGAGAAATTAATTCTGTATACCGATATTttgaaatgatcaaattaaatcATTCCTCCAATGTACGTATTCCACTAAACACAGTGCACAATGTAAAGTACacaatgtatgaatgaatatgtGTTATAATACGAATAAATTTCCTTAAAAAAATTTCATGTTTCCTTTTAACTAATAAACATCTTggaaattaacaaaatgaaaattataaatCCTAAATGAAGTAAGAGAAATAGAAAAAGTCCACAGTTTGCAGATTAGACACGTTTACATCCAAAGAGGAAAGTTCACTGGGTCTGCTTCTGTCAATCAGGCATGTGGAAAGCTTTTTTACAACCTTTGGACAGCCTTTGCTTAACCCTCATTAGTTTATGTACATTAAAGTCAGGAATATTGATTCTGGAACGTTTGCAAGAAAAATGAAACGACTGTCTGAGTGCAATCAGCAAACTTTTGGAAAGTTTTGGTGATTTTGCTGTGTCCTTTTGGAATTTTATTACAAAggtttgaatacattttaattcacaaaaaaagagtaaacataaaaata

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0042770 signal transduction in response to DNA damage biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0007049 cell cycle biological_process
GO:0016233 telomere capping biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0007095 mitotic G2 DNA damage checkpoint biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0000723 telomere maintenance biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0006281 DNA repair biological_process
GO:0000781 chromosome, telomeric region cellular_component
GO:0005634 nucleus cellular_component
GO:0030870 Mre11 complex cellular_component
GO:0005694 chromosome cellular_component
GO:0003678 DNA helicase activity molecular_function
GO:0003684 damaged DNA binding molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko04218 Cellular senescence
ko03032 DNA replication proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-041008-35 Predicted to enable damaged DNA binding activity. Predicted to be involved in DNA duplex unwinding; double-strand break repair via homologous recombination; and mitotic G2 DNA damage checkpoint signaling. Predicted to act upstream of or within double-strand break repair; meiotic cell cycle; and telomere maintenance. Predicted to be located in chromosome, telomeric region and nucleus. Predicted to be part of Mre11 complex. Human ortholog(s) of this gene implicated in several diseases, including Nijmegen breakage syndrome; acute lymphoblastic leukemia; aplastic anemia; breast cancer; and reproductive organ cancer (multiple). Orthologous to human NBN (nibrin).

Ensembl:

ensembl_id ENSDART00000187987

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021929 lncRNA upstream 16101 23811601 ~ 23821746 (+) False XLOC_009891
TCONS_00019712 lncRNA upstream 540641 23294686 ~ 23297206 (+) True XLOC_009879
TCONS_00019708 lncRNA upstream 961752 22872860 ~ 22876095 (+) True XLOC_009877
TCONS_00021928 lncRNA upstream 1141351 22695226 ~ 22696496 (+) True XLOC_009875
TCONS_00021927 lncRNA upstream 1182760 22649863 ~ 22655087 (+) False XLOC_009874
TCONS_00019763 lncRNA downstream 1855 23979380 ~ 23980174 (+) True XLOC_009900
TCONS_00021711 lncRNA downstream 7230 23984755 ~ 23991159 (+) False XLOC_009901
TCONS_00019766 lncRNA downstream 7252 23984777 ~ 23991098 (+) False XLOC_009901
TCONS_00021930 lncRNA downstream 7729 23985254 ~ 23991098 (+) True XLOC_009901
TCONS_00021931 lncRNA downstream 41583 24019108 ~ 24028618 (+) False XLOC_009902
TCONS_00019731 mRNA upstream 1925 23811554 ~ 23835922 (+) False XLOC_009891
TCONS_00019732 mRNA upstream 5778 23816933 ~ 23832069 (+) True XLOC_009891
TCONS_00019730 mRNA upstream 28236 23799622 ~ 23809611 (+) True XLOC_009890
TCONS_00019729 mRNA upstream 33421 23796612 ~ 23804426 (+) False XLOC_009890
TCONS_00019726 mRNA upstream 118198 23598908 ~ 23719649 (+) False XLOC_009888
TCONS_00019761 mRNA downstream 1453 23978978 ~ 23980268 (+) False XLOC_009900
TCONS_00019762 mRNA downstream 1513 23979038 ~ 23980354 (+) False XLOC_009900
TCONS_00019764 mRNA downstream 6654 23984179 ~ 23994642 (+) False XLOC_009901
TCONS_00019765 mRNA downstream 7230 23984755 ~ 23991161 (+) False XLOC_009901
TCONS_00019768 mRNA downstream 648923 24626448 ~ 24646067 (+) False XLOC_009906
TCONS_00019728 other upstream 230495 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019718 other upstream 438687 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019682 other upstream 2134168 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 2924363 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 3332982 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019767 other downstream 538567 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019777 other downstream 903597 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019779 other downstream 920646 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019780 other downstream 928031 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019788 other downstream 1117958 25095483 ~ 25096562 (+) False XLOC_009919

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_05018992_05033275.mRNA True 4213 mRNA 0.44 14 CI01000027 5018260 ~ 5034290 (+)