RNA id: TU497862


Basic Information

Item Value
RNA id TU497862
length 377
lncRNA type read_through
GC content 0.33
exon number 2
gene id G433595
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5758198 ~ 5815869 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATTAACGAAGGTCTTACGGGTCTGGAACGGCATGAGGGTGAGTAATAAATGACATTATTTTCATTTTTGGGTGAACTAACCCTTTAAGCCCTGAGGGTATTTTCAGAGTTGTTGTTTTTTTCTGAGTGAAACACAAAGTAAAGACTCGAAACTCAAACTATAGCAAGGAGAGTCAAAAGGTTGGTATCGTTTGAAAGGAAACTTTTTAAATTTTTAAATAAAAAAAAATAAAATTTGGACATTCTCATGCTGAGAAACTGGAGAGAAAAAAAAAATCTTTACATATCTTTCTAATGTAAAATGGAATATCTCATGAAGGATATCTCATAGCTGGATCATTTTTTTTTTGCTGATGTTCCTCTATATGTGAGCTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497833 lncRNA downstream 84547 5673412 ~ 5673651 (-) True G433583
TU497808 lncRNA downstream 167635 5567915 ~ 5590563 (-) True G433561
TU497754 lncRNA downstream 194529 5563418 ~ 5563669 (-) True G433518
TU497790 lncRNA downstream 231846 5525168 ~ 5526352 (-) True G433550
TU497763 lncRNA downstream 239819 5517830 ~ 5518379 (-) True G433527
TU497938 lncRNA upstream 33889 5849758 ~ 5852399 (-) True G433656
TU497907 lncRNA upstream 69334 5885203 ~ 5887132 (-) True G433628
TU497912 lncRNA upstream 195790 6011659 ~ 6028057 (-) True G433633
TU498234 lncRNA upstream 235936 6051805 ~ 6054634 (-) True G433940
TU498233 lncRNA upstream 287970 6103839 ~ 6107564 (-) True G433939
CI01000306_05732360_05733779.mRNA mRNA downstream 22350 5731283 ~ 5735848 (-) True CI01000306_05732360_05733779
CI01000306_05664945_05673274.mRNA mRNA downstream 84900 5664945 ~ 5673298 (-) True CI01000306_05664945_05673274
CI01000306_05631903_05640235.mRNA mRNA downstream 117963 5631733 ~ 5640235 (-) True CI01000306_05631903_05640235
CI01000306_05619706_05631189.mRNA mRNA downstream 127009 5619636 ~ 5631189 (-) True CI01000306_05619706_05631189
CI01000306_05606914_05611346.mRNA mRNA downstream 146852 5606605 ~ 5611346 (-) True CI01000306_05606914_05611346
CI01000306_05879886_05883498.mRNA mRNA upstream 62869 5878738 ~ 5884232 (-) True CI01000306_05879886_05883498
CI01000306_05888356_05890267.mRNA mRNA upstream 72200 5888069 ~ 5890366 (-) True CI01000306_05888356_05890267
CI01000306_05891607_05897232.mRNA mRNA upstream 75704 5891573 ~ 5897325 (-) True CI01000306_05891607_05897232
CI01000306_05902120_05929983.mRNA mRNA upstream 85929 5901798 ~ 5929983 (-) True CI01000306_05902120_05929983
CI01000306_05990444_06033972.mRNA mRNA upstream 173384 5989253 ~ 6033972 (-) True CI01000306_05990444_06033972
TU497685 other downstream 374435 5361643 ~ 5383763 (-) True G433450
TU497393 other downstream 1213106 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU496065 other downstream 2754307 3000236 ~ 3003891 (-) True G432022
TU495727 other downstream 4009248 1748822 ~ 1748950 (-) True G431728
TU495726 other downstream 4009976 1747526 ~ 1748222 (-) False G431728
TU497952 other upstream 225145 6041014 ~ 6041283 (-) True G433670
TU498286 other upstream 380238 6196107 ~ 6197210 (-) True G433985
TU498319 other upstream 539311 6355180 ~ 6361643 (-) True G434016
TU498395 other upstream 621537 6437406 ~ 6452251 (-) True G434086
TU498677 other upstream 1050787 6866656 ~ 6866936 (-) True G434338

Expression Profile