RNA id: TU498234


Basic Information

Item Value
RNA id TU498234
length 1969
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G433940
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 6051805 ~ 6054634 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATAAATGCCATTGAGTGAAAGTTCAATACAAATCTATGTAAACAATCTCCTTTAAAAAAAATCAATCTCTGAGGATAACCCTTAAATGCTCATATTGAATGTAAAGAAAAATATAAATATGATTTAAATTGATTTCCAAGTGTTTTGAATGTGCTTTAATTTGTCTTTAATCTCTAGTTATAGATATAAAATCATTTTCATAACCCTACACTGTAAAAAAGAATTGTTGGTTTAAAGGTGATTGGTTTAATCAACAGAAACTCAAAATATTGTTTTCTGAACCACATTAATTATCTAAGTTGATATGACAAAAGAAAAAATGTGATAACAAATCATGAAAATATTTTTTACAGTGTTAAAAATGCAGTGTTGATGCTAAAATCCATTTTTATGCATTGTAAACTGACAAATGTTGATTAAAAACAGTTTTAAAAAACAAGGTGTCCATACATCAGGCAAAGTGAGCAGAAAATGGTTTCAAAACTTCAAAAAAGGTTTTCAACTAACGTGCAGCTGTGACTCCTTAAAAGATATTCATCTTTCGGCCATGACATTTAAATTTCTATTTAAAAACAGTGCCTAAAATGGGTTTTATATTCAACTTCTGTAAGAAAGATACATTCTGATGTCAAATTAATTTTGGCAGAACAGGGTTCATCCTGATGGAGGAGAAAGCTCCGATATGCTTGATGATATTGGGTTCAACGCTGTGTGCCTTCTCACCTGGCATCGACCTGGCTTTCTTGTACAGCACCATGTCTTTTGCATTACCCTGAGCACAGACGGCATGGTCCAGGTATTCGGCAACTCGGATGGAGGCATTACCTGGGTACAGCATAGCAGGGGTGCAGCATTCAGTGGCAGGAGACACAGCATACAGCTGGGGTGAGAGCCGTCTGATCTCCAGCAGATAGTGCCTCCCTGCCAGCTCAGCCACGGCCATTATGTAGAGAGTTAGAAAGAGAAGATGAAGAGGTGTACAGTGAGAAAAAAAGAGGAGGAGGATTGTAGCCCCAAACAGGCCGAGACCCAGCCATTCTAGAATGCGATACGGCTCCGGGTTCCAGTATCCCTGCAGACGTTCCGGATGGTAGAGCTTTATGTATAAAGTGTTGCGGGCAAATCTCCGCGAGAGTAAGTTTTTAATCAACGGAAAGAAATCGGTCATCGGAAGTGCATCATCCTCTAGGACAACGGTGTTTTTTGGCCTCATCAGGTCCCATCCTTTCCGCAGGCAGTAGACGTAATCTCTTTTCTCCTTCTCGAAGATGTTAGTTACGTCTTTGTTATGCCATTTCTCATCTGGAGAACGTCTAACAACCAAAAACTGTTTCTCCAGAAGCAAAGCATCCTCATTCAAAGCGGGACCACTTTCAACATCACAGAGCATGACCTCAGCGCATGGTTTATCACCACACGCCTTAAGGAGCAATTTGAGCTGTTGTACCACCTGTAACAGGTAGTGGTAGTCCCTTCCCTCTGTTCTCCTGGCTGTCACAATAGTGACCAGGAGATCTGGCTTCGTAGCATCTGTTTCCAACGGGTCCTTCAGGCTTTTCGTAGAGGCAGCATTCTCCCAGAAATGCAGGGCCTCCTGACCTCTGTTGTAGCTTTCTTGTAGTGATGCATCGCTTAGTGAATCAAGGTAAACATTCTTTAAAAAATAATGTGAGTAGAGTACATGATGGCAGCATATAGGCAATATCACTCCAAAGGTTAAAACACACAAAATCAGCCCTTGAGCTACTGGGCTTGACCAACGAAAGATCTTGCTTGTACAAGTCCCCCATCGAGGCATCTGTGTCCGTTTAAACTGAGGTCACAATTCACTTCTGTGATAGTTCACTTCAGCGCTGAGGTGACGGATATGTTGCACAGGTGGAGGGATGGGGTGGATCCAGATTTAAGCCAATGTGCATTAAAAGTCACTTAAATATGAGATTATGAACTTCAGAGATATTTCCAACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497912 lncRNA downstream 23748 6011659 ~ 6028057 (-) True G433633
TU497907 lncRNA downstream 164673 5885203 ~ 5887132 (-) True G433628
TU497938 lncRNA downstream 199406 5849758 ~ 5852399 (-) True G433656
TU497862 lncRNA downstream 235936 5758198 ~ 5815869 (-) True G433595
TU498233 lncRNA upstream 49205 6103839 ~ 6107564 (-) True G433939
TU498244 lncRNA upstream 84043 6138677 ~ 6139696 (-) True G433948
TU498302 lncRNA upstream 202371 6257005 ~ 6257347 (-) True G434001
TU498340 lncRNA upstream 284345 6342118 ~ 6344738 (-) True G434035
TU498370 lncRNA upstream 351891 6406525 ~ 6406767 (-) True G434064
CI01000306_06048083_06049632.mRNA mRNA downstream 2173 6047839 ~ 6049632 (-) True CI01000306_06048083_06049632
CI01000306_05990444_06033972.mRNA mRNA downstream 17833 5989253 ~ 6033972 (-) True CI01000306_05990444_06033972
CI01000306_05902120_05929983.mRNA mRNA downstream 121822 5901798 ~ 5929983 (-) True CI01000306_05902120_05929983
CI01000306_05891607_05897232.mRNA mRNA downstream 154480 5891573 ~ 5897325 (-) True CI01000306_05891607_05897232
CI01000306_05888356_05890267.mRNA mRNA downstream 161439 5888069 ~ 5890366 (-) True CI01000306_05888356_05890267
CI01000306_06108667_06110250.mRNA mRNA upstream 53624 6108258 ~ 6110250 (-) True CI01000306_06108667_06110250
CI01000306_06244021_06244397.mRNA mRNA upstream 189301 6243935 ~ 6244397 (-) True CI01000306_06244021_06244397
CI01000306_06253870_06254391.mRNA mRNA upstream 198712 6253346 ~ 6256066 (-) True CI01000306_06253870_06254391
CI01000306_06273326_06277287.mRNA mRNA upstream 217781 6272415 ~ 6277442 (-) True CI01000306_06273326_06277287
CI01000306_06289571_06299875.mRNA mRNA upstream 234514 6289148 ~ 6300251 (-) True CI01000306_06289571_06299875
TU497952 other downstream 10522 6041014 ~ 6041283 (-) True G433670
TU497685 other downstream 668042 5361643 ~ 5383763 (-) True G433450
TU497393 other downstream 1506713 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU496065 other downstream 3047914 3000236 ~ 3003891 (-) True G432022
TU495727 other downstream 4302855 1748822 ~ 1748950 (-) True G431728
TU498286 other upstream 141473 6196107 ~ 6197210 (-) True G433985
TU498319 other upstream 300546 6355180 ~ 6361643 (-) True G434016
TU498395 other upstream 382772 6437406 ~ 6452251 (-) True G434086
TU498677 other upstream 812022 6866656 ~ 6866936 (-) True G434338
TU500988 other upstream 3601645 9656279 ~ 9671776 (-) True G436446

Expression Profile