Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU500987 |
| length | 8349 |
| lncRNA type | antisense_over |
| GC content | 0.38 |
| exon number | 3 |
| gene id | G436445 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 9679509 ~ 9688407 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU501042 | lncRNA | downstream | 30729 | 9648484 ~ 9648780 (-) | True | G436500 |
| TU501022 | lncRNA | downstream | 53100 | 9625081 ~ 9626409 (-) | True | G436480 |
| TU500991 | lncRNA | downstream | 56118 | 9601349 ~ 9623391 (-) | True | G436449 |
| TU501015 | lncRNA | upstream | 83781 | 9772188 ~ 9785527 (-) | True | G436473 |
| TU501178 | lncRNA | upstream | 165819 | 9854226 ~ 9854681 (-) | True | G436631 |
| TU501189 | lncRNA | upstream | 203773 | 9892180 ~ 9893208 (-) | True | G436639 |
| TU501219 | lncRNA | upstream | 206635 | 9895042 ~ 9895283 (-) | True | G436664 |
| TU501220 | lncRNA | upstream | 207111 | 9895518 ~ 9895742 (-) | True | G436665 |
| CI01000306_09628418_09641286.mRNA | mRNA | downstream | 38223 | 9627821 ~ 9641286 (-) | True | CI01000306_09628418_09641286 |
| CI01000306_09522093_09523814.mRNA | mRNA | downstream | 153956 | 9522033 ~ 9525553 (-) | True | CI01000306_09522093_09523814 |
| CI01000306_09381571_09461159.mRNA | mRNA | downstream | 217936 | 9381187 ~ 9461573 (-) | True | CI01000306_09381571_09461159 |
| CI01000306_09374084_09380300.mRNA | mRNA | downstream | 299003 | 9373287 ~ 9380506 (-) | True | CI01000306_09374084_09380300 |
| CI01000306_09309973_09348444.mRNA | mRNA | downstream | 331065 | 9309973 ~ 9348444 (-) | True | CI01000306_09309973_09348444 |
| CI01000306_09690177_09739046.mRNA | mRNA | upstream | 1527 | 9689934 ~ 9739046 (-) | True | CI01000306_09690177_09739046 |
| CI01000306_09753380_09774568.mRNA | mRNA | upstream | 63961 | 9752368 ~ 9774784 (-) | True | CI01000306_09753380_09774568 |
| CI01000306_09801952_09806496.mRNA | mRNA | upstream | 113540 | 9801947 ~ 9808800 (-) | True | CI01000306_09801952_09806496 |
| CI01000306_09825468_09827244.mRNA | mRNA | upstream | 136168 | 9824575 ~ 9827282 (-) | True | CI01000306_09825468_09827244 |
| CI01000306_09879930_09884435.mRNA | mRNA | upstream | 190287 | 9878694 ~ 9885270 (-) | True | CI01000306_09879930_09884435 |
| TU500988 | other | downstream | 7733 | 9656279 ~ 9671776 (-) | True | G436446 |
| TU498677 | other | downstream | 2812573 | 6866656 ~ 6866936 (-) | True | G434338 |
| TU498395 | other | downstream | 3227258 | 6437406 ~ 6452251 (-) | True | G434086 |
| TU498319 | other | downstream | 3317866 | 6355180 ~ 6361643 (-) | True | G434016 |
| TU498286 | other | downstream | 3482299 | 6196107 ~ 6197210 (-) | True | G433985 |
| TU501173 | other | upstream | 146618 | 9835025 ~ 9836323 (-) | True | G436626 |
| TU501193 | other | upstream | 333741 | 10022148 ~ 10025375 (-) | True | G436643 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00007067 | False | 1159 | mRNA | 0.45 | 6 | NC_007122.7 | 37275448 ~ 37298938 (+) |
