RNA id: TCONS_00007067


Basic Information

Item Value
RNA id TCONS_00007067
length 1159
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_003627
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37250839 ~ 37298938 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCGTCAAACGGCGCTCAGAGAAATCTCTGCTGGGTGTGTTTTTGCGCGAAACGCGAACTGTTTTTATTGACCTCATCACTTTCGCCTGTTTATGTCGTGAGAAGATTCTTCTTATCAGCCATTCTAACAGTAAACTTTGTGGAAAGCGAGGGTTTTGGAGCACTCAACCGTGGCCTGAGCATTTCACTAGTGCATGGAGAAAACAAACCAGTGTCACCAATGTCACGGATGTTCATCCTGTCTGCTGCGCTCAGTGTGGCCCTTTCTCATCTAACCTGGGGTCAAAACTGCTCAGATCACTGCAAAGCATGTGGAGGGCCAGAGAACAACCAGTGTCTTCAGTGCCAAACCGGATTCATCCTGCATGACAACCTGTGTGTGGACATTGACGAATGCGGGACTGATCTGGATCAATGTCCTCACAACACATACTGCTTCAACACACGGGGCTCTTATGAATGCAAAGGCTGTGATAAGGCTTGTGTTGGCTGTATGGGTGGAGGAGCCGCTCGCTGTAAGAAATGTGCTCCTGGTTACAGATCTTCAGGCCTGAGATGCATGGATGTAGATGAGTGCGGTGAGGAGGTTTTAGCCTGCGCTGGACTCAATGTGTTCTGTGTGAATACTGAAGGCTCTTTCCAGTGTCAGTGTGCGGAGGGATTCACTCGCAGAGAGCAGAACTGTGAGAGACAACAGACCTCAGGCAGGAGAATCATCCCCCTACTTCAAGTATTCAATAGTAAAAGGTCCTGAAGGTGGAGGACTGCAGAATGTCTCCCAAAAGGTCAAGTTTGACGtctttatgtatttcttttccctttttttttgtcCTCTTGCTTTGCCTTATAATACAATTACAGACTTgcacaacagacagacagacataaatagTAGAATATCAGATCAGACACTCCACTGTTGATTGAAACTGGACTCAGAAACATCCAAGATGATTTTTACATGTTGTGTGGACAGATTCAGGATGTGTGTTCCTTAATAGATACAGGTTCAGGAAGGCAACATAGGAATATTCTAGAAATAAGTGACAATGACTGAAAACTACTTGTTCATTGTGACACGTCATTGTGAGTATGTCCAGCCGATTCGattgttatcactcgattgaatgggagTTATCattggttatcagctgataga

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030368 interleukin-17 receptor activity molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04657 IL-17 signaling pathway
ko04050 Cytokine receptors

Ensembl:

ensembl_id ENSDART00000161423

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007065 lncRNA upstream 15785 37256303 ~ 37259663 (+) False XLOC_003627
TCONS_00007056 lncRNA upstream 105010 37169813 ~ 37170438 (+) True XLOC_003623
TCONS_00008651 lncRNA upstream 137606 37136800 ~ 37137842 (+) False XLOC_003623
TCONS_00008652 lncRNA upstream 137606 37137076 ~ 37137842 (+) False XLOC_003623
TCONS_00007052 lncRNA upstream 175299 37096519 ~ 37100149 (+) False XLOC_003622
TCONS_00007073 lncRNA downstream 332776 37631714 ~ 37634030 (+) False XLOC_003629
TCONS_00007074 lncRNA downstream 332842 37631780 ~ 37634030 (+) True XLOC_003629
TCONS_00008654 lncRNA downstream 542319 37841257 ~ 37848711 (+) False XLOC_003634
TCONS_00008653 lncRNA downstream 542319 37841257 ~ 37848711 (+) True XLOC_003634
TCONS_00008655 lncRNA downstream 696128 37995066 ~ 38000612 (+) True XLOC_003636
TCONS_00007063 mRNA upstream 219 37250839 ~ 37275229 (+) False XLOC_003627
TCONS_00007064 mRNA upstream 21760 37251825 ~ 37253688 (+) False XLOC_003627
TCONS_00007059 mRNA upstream 45915 37201489 ~ 37229533 (+) False XLOC_003625
TCONS_00007058 mRNA upstream 46229 37201483 ~ 37229219 (+) False XLOC_003625
TCONS_00007070 mRNA downstream 313276 37612214 ~ 37631714 (+) False XLOC_003629
TCONS_00007071 mRNA downstream 313299 37612237 ~ 37629293 (+) False XLOC_003629
TCONS_00007072 mRNA downstream 313734 37612672 ~ 37614519 (+) False XLOC_003629
TCONS_00007076 mRNA downstream 339935 37638873 ~ 37651879 (+) False XLOC_003630
TCONS_00007075 mRNA downstream 339935 37638873 ~ 37651879 (+) False XLOC_003630
TCONS_00007061 other upstream 61225 37214108 ~ 37214223 (+) True XLOC_003626
TCONS_00007048 other upstream 280640 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007036 other upstream 693076 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007022 other upstream 889624 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007020 other upstream 906256 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007069 other downstream 65508 37364446 ~ 37364560 (+) True XLOC_003628
TCONS_00007077 other downstream 340042 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007079 other downstream 340044 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007081 other downstream 340301 37639239 ~ 37644565 (+) False XLOC_003630
TCONS_00007082 other downstream 348615 37647553 ~ 37650028 (+) True XLOC_003630

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU500987 True 8349 lncRNA 0.38 3 CI01000306 9679509 ~ 9688407 (-)