RNA id: TCONS_00007056


Basic Information

Item Value
RNA id TCONS_00007056
length 483
lncRNA type retained_intron
GC content 0.34
exon number 2
gene id XLOC_003623
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37136800 ~ 37170438 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCAGCATTCATGCTTCATCCTTGATCATTTGTGATCATTCTGTTTGTATCATTAGTttatccttaatttttttttatttaattcagttgTTTTTGATGGCGATGCTGTTATGCTTCTAAATACTTTAACACGCTGCACGGCTTCACAGTAATCTTGCTTTAATTATTCTCACTTTAAAGTTTTTCAAGCCCAAACCACCACTGTTAAACCATTAattattttctgtttcagtattttaatattttggccTGTAATACCTTACATCTAATTCACGTTTATATTgcagttgttatttttaaatgacacATTCCATGTATTTATGTGATTATGCACAGTGATTTTCAAAAGAGAACTAATCTGAATAATTTTTCTTTTGTGTAGGGTCAACACTTAAGCGCCTGTGTCTGGGTAAAGAACGTGGCAGCAGATCTGGAGCATCATCAGGTGCCTCAAATCAATCCCCTATGCCTCCTGGATccac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-160114-3 Predicted to enable chloride channel inhibitor activity; potassium channel inhibitor activity; and protein serine/threonine kinase activity. Predicted to be involved in several processes, including intracellular signal transduction; protein phosphorylation; and regulation of metal ion transport. Predicted to be active in cytosol. Orthologous to human WNK2 (WNK lysine deficient protein kinase 2).

Ensembl:

ensembl_id ENSDART00000173202

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008651 lncRNA upstream 31971 37136800 ~ 37137842 (+) False XLOC_003623
TCONS_00008652 lncRNA upstream 31971 37137076 ~ 37137842 (+) False XLOC_003623
TCONS_00007052 lncRNA upstream 69664 37096519 ~ 37100149 (+) False XLOC_003622
TCONS_00007041 lncRNA upstream 511174 36657025 ~ 36658639 (+) True XLOC_003614
TCONS_00007040 lncRNA upstream 513048 36653213 ~ 36656765 (+) True XLOC_003613
TCONS_00007065 lncRNA downstream 85865 37256303 ~ 37259663 (+) False XLOC_003627
TCONS_00007073 lncRNA downstream 461276 37631714 ~ 37634030 (+) False XLOC_003629
TCONS_00007074 lncRNA downstream 461342 37631780 ~ 37634030 (+) True XLOC_003629
TCONS_00008654 lncRNA downstream 670819 37841257 ~ 37848711 (+) False XLOC_003634
TCONS_00008653 lncRNA downstream 670819 37841257 ~ 37848711 (+) True XLOC_003634
TCONS_00007055 mRNA upstream 14170 37144328 ~ 37155643 (+) False XLOC_003623
TCONS_00007051 mRNA upstream 67826 37095165 ~ 37101987 (+) False XLOC_003622
TCONS_00007053 mRNA upstream 69694 37096520 ~ 37100119 (+) True XLOC_003622
TCONS_00007050 mRNA upstream 80879 37049347 ~ 37088934 (+) True XLOC_003621
TCONS_00007049 mRNA upstream 85512 37049105 ~ 37084301 (+) False XLOC_003621
TCONS_00007057 mRNA downstream 7833 37178271 ~ 37200200 (+) True XLOC_003624
TCONS_00007058 mRNA downstream 31045 37201483 ~ 37229219 (+) False XLOC_003625
TCONS_00007059 mRNA downstream 31051 37201489 ~ 37229533 (+) False XLOC_003625
TCONS_00007060 mRNA downstream 31063 37201501 ~ 37229098 (+) False XLOC_003625
TCONS_00007062 mRNA downstream 46230 37216668 ~ 37223768 (+) True XLOC_003625
TCONS_00007048 other upstream 175005 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007036 other upstream 587441 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007022 other upstream 783989 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007020 other upstream 800621 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007007 other upstream 2076091 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007061 other downstream 43670 37214108 ~ 37214223 (+) True XLOC_003626
TCONS_00007069 other downstream 194008 37364446 ~ 37364560 (+) True XLOC_003628
TCONS_00007077 other downstream 468542 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007079 other downstream 468544 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007081 other downstream 468801 37639239 ~ 37644565 (+) False XLOC_003630

Expression Profile

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