RNA id: TCONS_00007057


Basic Information

Item Value
RNA id TCONS_00007057
length 2918
RNA type mRNA
GC content 0.43
exon number 23
gene id XLOC_003624
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37178271 ~ 37200200 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTCATCTCAGGTCACCATGGACAAAGCTGCGCTGAGACTAACTTTATTTGGCCTTCTGTTCACCTGTGTCAACTTGGCTGCAGAAAAGaaaaaaatagaCATTTACAGCTTCCACATCAACTGTACAGTCACCGGCCGCTACGCAACCACAGTCATCACAAGTCGTGTGGCAAATGTTTTGAATAAGTCTCAAGAGGTCAATTTTGAAGTCCAAATACCCAAGAATGCCTTCATTAGTCAGTTCAGAATGACCATCGATGGGAGGACATATGATGCAATTGTGAAGGAAAAAGAGGAAGCTCAGCAGGAATACAGTCAAGCCGTATCGCGAGGAGAAAGTGCTGGATTGGTCAGTGCTGTTGGACGGACTTTAGAGGAATTTAAAACATCAGTGACAGTGGCTGCAGACAGTAAAGTAACCTTTGAGTTGACCTACGAGGAACTTTTAAAGCGCCGTCTTGGCAAATATGAGCTGCTCATCAACGCCCAACCAATGCAGCCGGTGGCGGACTTTAAGATTGACGTACACATTCATGAGAGCGCTGGAATTTCACTCTTGGAGGTCAAAGGTGGTCTGAACACTAAGGATCTGGCGAATGCAGTCACTACCACCAGAGCACAGCAAGatGCATGGGTGAAATTCTACCCCACTCGTGACCAGCAAAAGGATTGTGACGACTGTACTAAAAACGGTCTCAATGGCAACCTGGTCATTATGTATGATGTTGAAAGAGTAAAACAAAGTGGAGATTTCAAGgtaGCAAATGGCTACTTTGTCCACTACTTCGCACCTACAGATGTTGAACGCATTCCCAAAAACGTGGTATTTATTATTGATCAAAGTGGTTCTATGCAAGGCAATAAAATAGAGCAGACTCGAATGGCAATGCTGAGGATTTTGAGTGACCTTGCTAAAGATGACTACTTCGGGTTGATCACGTTCAGCAGTCACATTGAAGCCTGGAAACCAGAACTACTGAAAGCGACTGCAGAAAATGTGGAAGAAGCAAAGACATTTGTGAAGCAAATTAGGAGTGGAGGAGCTACAGACATAAATGGTGCTGTGCTAAATGCTGTAAACATGATCAACCAATACACACAAGAGGGATCCGCGTCCATCCTGATCCTGTTGACAGATGGAGACCCCACTTCAGGTGTGACCAACCCAGTGACGATTCAGCAAAATGTGAAAACGGCCATCGGTGGAAAATATCCTCTGTACTGTTTGGGTTTCGGGTTTAATGTCCGCTTTGAGTTTCTGGAAAAGATGTCATTGGAAAATAACGGCGCTGCTCGCAGAATTTATGAGGATTCTGATGCGGATCTTCAACTGCAGGGCTTTTATGAAGAAGTGGCCATTCCACTTTTGACCAATGTCCAGCTTAACTACCAAGGAGTGGCCAAAGTAACCCAAACCACTTTCAGCCAGTACTACAATGGATCTGAGATTGTGGTGGCCGGTTATATAACTGATAACAGTTTGGAAAGTTTGACGACTGAGGTCATTGCATTATCGAAAAGCACTAAGGTGGTATATAATGACAGTGTACTCACAGACGATTTCGAAAATGACGGACTTGAACACGGCAACTACATTAGTAGATTATGGGCCTTTCTCACAGTGAAGCAGTTACTGGCGAAAACCATGCTCCTAAAAGGCCAGGAAAAAGACAACGCAAAGAAAGAAGCCCTTGATCTTTCTCTCAAGTACAAATTTGTCACACCACTTACATCGATGGTGGTCACCAAGCCTCAGGGAGACGAAGTGCAGGTTGCGGTCAAACCCAATGAAGAAAAGAGACATTCATCAGGAAGGAAACAAACGTCCAAGGACAGCACTAGAATGCATTTAGCAGCCAGTCCAGATAATATGCATTATTTTAAGACCCCTACAAGGCATCACCATGGTAGCAGAAACAAAATCGCCTCACAAAGACCCATTCAACATAGTTTCAGAAAGATTCCAATATTTGCACCTGATTATCATGACTTATTTGATGCTGAATTAGGTATGTGGTACCAATTACCAAAAACAACTCAGAAACCTCTGGCAACCTCTCCTCCATGGAAGAGCATTAGGATCTTGAAATCTTCTGGTAATGCTCAGCCTATTTGTTATGACGTTCCTTTTGCTCTTAATGTCAGACTTCAACAGAATGAcccaacagAATTCTATATGAATGGGGAGCTTGAGGCGATGGGAGGGAAAGGTTTCAAACAAATTGACATTTCTTACAAAACGAATCACCAGCTTCGGCTCAGCGCTACTAAAATTGACTACTCTTATGGGTCGGAGTCAATGACGTTTTCTTGGGATCAAGAACTCACCCACCATGAGACAGAACATGTATCTCTGGTTCTGAGGAGTAATGAAATGGACGTTACGATGGGAAACATGCGCATTGTCATTCTTCTTCATAAAGAAGATGGTAGTGTTTTTCTCTGGCCTGCAGTTCTTCAGCAGCCAAAAGATGTCAGTTCATCTGGCATTTTAGGAGAAGCTGAGGTTTCATATGAGGTGATTCTGGGATTGCAAACATCAATACTGAAGCTGAAGGACCAGGTAGTGAAGGCATCTtgGGTGACAATGAAGGACTACAGGCTTCCTGCTGCTCCTGTCATTGGATGTTGGCTTGTCCCGTTTGAAGCTGTCACGCAGAAGACGATCTCTGATTTTGCCATCACTCAGCCGTAGATTCAGCACAACTTACTACATCATTCATATCAAGCATTATCATCTGACCTAGTATCTAGTCTGTATTATGGTCACTGTTAATGTTTAAAAAGCTGTGAAATCTGCAGCATGCCTtaataatgtgaaaaatatcacattaatatgatataaaatctaacattgcctataattttttttgctttaaatttttttgctggtcgttcaaactactcatttaaaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000161771

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007056 lncRNA upstream 7833 37169813 ~ 37170438 (+) True XLOC_003623
TCONS_00008651 lncRNA upstream 40429 37136800 ~ 37137842 (+) False XLOC_003623
TCONS_00008652 lncRNA upstream 40429 37137076 ~ 37137842 (+) False XLOC_003623
TCONS_00007052 lncRNA upstream 78122 37096519 ~ 37100149 (+) False XLOC_003622
TCONS_00007041 lncRNA upstream 519632 36657025 ~ 36658639 (+) True XLOC_003614
TCONS_00007065 lncRNA downstream 56103 37256303 ~ 37259663 (+) False XLOC_003627
TCONS_00007073 lncRNA downstream 431514 37631714 ~ 37634030 (+) False XLOC_003629
TCONS_00007074 lncRNA downstream 431580 37631780 ~ 37634030 (+) True XLOC_003629
TCONS_00008654 lncRNA downstream 641057 37841257 ~ 37848711 (+) False XLOC_003634
TCONS_00008653 lncRNA downstream 641057 37841257 ~ 37848711 (+) True XLOC_003634
TCONS_00007054 mRNA upstream 7833 37137196 ~ 37170438 (+) False XLOC_003623
TCONS_00007055 mRNA upstream 22628 37144328 ~ 37155643 (+) False XLOC_003623
TCONS_00007051 mRNA upstream 76284 37095165 ~ 37101987 (+) False XLOC_003622
TCONS_00007053 mRNA upstream 78152 37096520 ~ 37100119 (+) True XLOC_003622
TCONS_00007050 mRNA upstream 89337 37049347 ~ 37088934 (+) True XLOC_003621
TCONS_00007058 mRNA downstream 1283 37201483 ~ 37229219 (+) False XLOC_003625
TCONS_00007059 mRNA downstream 1289 37201489 ~ 37229533 (+) False XLOC_003625
TCONS_00007060 mRNA downstream 1301 37201501 ~ 37229098 (+) False XLOC_003625
TCONS_00007062 mRNA downstream 16468 37216668 ~ 37223768 (+) True XLOC_003625
TCONS_00007063 mRNA downstream 50639 37250839 ~ 37275229 (+) False XLOC_003627
TCONS_00007048 other upstream 183463 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007036 other upstream 595899 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007022 other upstream 792447 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007020 other upstream 809079 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007007 other upstream 2084549 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007061 other downstream 13908 37214108 ~ 37214223 (+) True XLOC_003626
TCONS_00007069 other downstream 164246 37364446 ~ 37364560 (+) True XLOC_003628
TCONS_00007077 other downstream 438780 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007079 other downstream 438782 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007081 other downstream 439039 37639239 ~ 37644565 (+) False XLOC_003630

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_09559074_09602026.mRNA True 7630 mRNA 0.43 55 CI01000306 9558978 ~ 9602246 (+)