RNA id: TCONS_00007052


Basic Information

Item Value
RNA id TCONS_00007052
length 652
lncRNA type retained_intron
GC content 0.51
exon number 4
gene id XLOC_003622
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37095165 ~ 37101987 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGACAGAGAGCTTCTCCGAGCAGCTGCGAATAGACAGCCGGTTCCTGAAATCGGACCGTCGTCTGGACACAGAACTGGTGGACAAACTGATCCTGCAGCTCAACCGAATCTACCCACAGATCCTGACCGACAAAGAGGCCTCCAAATTCCGGGATCTGGATGTTCCCACCTGTATCCGGCTGGCGGAGCTGCTGTCTCGTCTGCAGGAGAAAGGAGAAGAGGCCTGTCGAGAGTTTTACAGGGCACTGCACCTCCACGTGGAGGACGTTTACTTCAGCTTACCCACACGCCTTCGGCTCAGAGAATCTGGTGATCCAGTCAGTCCAGTCTCCAGTCCCACCACCAGATATGTGCTGAATGACCACAGTAAGTCCGGTGACCATGCAGTAGTGAAAACAGAATTAACACAAATTATACAtgagcttgtttttgtttttcattgcgCAGGCCCGTTTTTCTTCATTAGTTGTTTCAGTGTGGCTGTAGGAGCAGCTCTGCTTCATTACTATGGTGAGTCGAAGCAGGTGTCCGGCTCCAGCAGCGCTCTGGGTTTGGCTGCCATGGGTCTGAGCAGGAAAGTGCGGGACGTTCTCATCTGGTACTCTGAGGatggaaaataattatctttTGCTGCCTTAAAAATGATTTAG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-5 Predicted to be active in mitochondrion. Is expressed in musculature system; myotome; and somite. Orthologous to human CARD19 (caspase recruitment domain family member 19).

Ensembl:

ensembl_id ENSDART00000157335

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007041 lncRNA upstream 437880 36657025 ~ 36658639 (+) True XLOC_003614
TCONS_00007040 lncRNA upstream 439754 36653213 ~ 36656765 (+) True XLOC_003613
TCONS_00007038 lncRNA upstream 455664 36600242 ~ 36640855 (+) True XLOC_003611
TCONS_00007039 lncRNA upstream 483355 36612354 ~ 36613164 (+) True XLOC_003612
TCONS_00007037 lncRNA upstream 506031 36587329 ~ 36590488 (+) True XLOC_003610
TCONS_00008651 lncRNA downstream 36651 37136800 ~ 37137842 (+) False XLOC_003623
TCONS_00008652 lncRNA downstream 36927 37137076 ~ 37137842 (+) False XLOC_003623
TCONS_00007056 lncRNA downstream 69664 37169813 ~ 37170438 (+) True XLOC_003623
TCONS_00007065 lncRNA downstream 156154 37256303 ~ 37259663 (+) False XLOC_003627
TCONS_00007073 lncRNA downstream 531565 37631714 ~ 37634030 (+) False XLOC_003629
TCONS_00007050 mRNA upstream 7585 37049347 ~ 37088934 (+) True XLOC_003621
TCONS_00007049 mRNA upstream 12218 37049105 ~ 37084301 (+) False XLOC_003621
TCONS_00007047 mRNA upstream 60684 36989696 ~ 37035835 (+) True XLOC_003619
TCONS_00007046 mRNA upstream 307722 36777614 ~ 36788797 (+) True XLOC_003618
TCONS_00007045 mRNA upstream 311446 36777613 ~ 36785073 (+) False XLOC_003618
TCONS_00007054 mRNA downstream 37047 37137196 ~ 37170438 (+) False XLOC_003623
TCONS_00007055 mRNA downstream 44179 37144328 ~ 37155643 (+) False XLOC_003623
TCONS_00007057 mRNA downstream 78122 37178271 ~ 37200200 (+) True XLOC_003624
TCONS_00007058 mRNA downstream 101334 37201483 ~ 37229219 (+) False XLOC_003625
TCONS_00007059 mRNA downstream 101340 37201489 ~ 37229533 (+) False XLOC_003625
TCONS_00007048 other upstream 101711 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007036 other upstream 514147 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007022 other upstream 710695 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007020 other upstream 727327 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007007 other upstream 2002797 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007061 other downstream 113959 37214108 ~ 37214223 (+) True XLOC_003626
TCONS_00007069 other downstream 264297 37364446 ~ 37364560 (+) True XLOC_003628
TCONS_00007077 other downstream 538831 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007079 other downstream 538833 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007081 other downstream 539090 37639239 ~ 37644565 (+) False XLOC_003630

Expression Profile

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