RNA id: TCONS_00007037



Basic Information


Item Value
RNA id TCONS_00007037
length 878
lncRNA type lincRNA
GC content 0.37
exon number 5
gene id XLOC_003610
representative True

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36587329 ~ 36590488 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CAGCTCCTCATGGAGGTTCAGACCAACAACACACTTCAGAAACCCGTCATCAGTGTTAGTGAAAATGAGGATCTGCTCAGCATATCATGTGATATACCAGCTTCAGACAGAGCTGATGTGTCCTGTAATCTCTACACTGTAGATGGAGCTCTTCTGACCAGCCGTGACTCTCAGTGGAGTTCATCTGGAGAGCAACATCTTTGTATGTTTTATCAAAATCTTAGTGATCTCTTGAGAAGATCAGGACACATCAGACAGTTGAGCTGTGATTATTCACTCAAGACTAAACCTGGCATCAGATCTCCACACAGTGACCCATACACACTCAGAGTGCTAGACCTCCATTTCACGACAGACCTGCCAACcagcacaacaaagcaaacaatATTTTTAACAACAAGGTCCCGTCGACACTCTGCTTCACCAATCGACAAAGAAACATCAACAATCACTGTCATTTCCACGACTGAATCCTCAATGTCCACAAAACACGGTAACTTCTTTAACACTAATATTACTAGATTTCTATAACTACCTACCAAATGTCATTATTCAAgtcatactgtatttacatttgaaTCTTCTATTGAGGTTCTAGCATTAAGCTGAAAATGTCTGCCACTACATTTTAAGGTGTTTATGTGTAATATTTAAGAAAAGGAAAAATATAGCATGAAATTGTTGCTACATTAATGGGTTGAAAGGATGACTGTtcagaatttttcattttttacttgTGTTGTAGCCGGGTCTGAATAGATTGTCTTTCCAAACATGCAAAAATGAACAATTAGAGAAAAAACGCATTGAttcagtaaaattattttataatatattgtaCATTTAATGATAGGTCATCCTGGCACTTAAAtattcag

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194767

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00007035 lncRNA upstream 9711 36574375 ~ 36577618 (+) False XLOC_003608
TCONS_00007034 lncRNA upstream 9711 36574375 ~ 36577618 (+) True XLOC_003608
TCONS_00007033 lncRNA upstream 19922 36564913 ~ 36567407 (+) True XLOC_003607
TCONS_00007032 lncRNA upstream 22025 36564610 ~ 36565304 (+) False XLOC_003607
TCONS_00007031 lncRNA upstream 25527 36554936 ~ 36561802 (+) True XLOC_003606
TCONS_00007038 lncRNA downstream 9754 36600242 ~ 36640855 (+) True XLOC_003611
TCONS_00007039 lncRNA downstream 21866 36612354 ~ 36613164 (+) True XLOC_003612
TCONS_00007040 lncRNA downstream 62725 36653213 ~ 36656765 (+) True XLOC_003613
TCONS_00007041 lncRNA downstream 66537 36657025 ~ 36658639 (+) True XLOC_003614
TCONS_00007052 lncRNA downstream 506031 37096519 ~ 37100149 (+) False XLOC_003622
TCONS_00007025 mRNA upstream 97513 36477481 ~ 36489816 (+) True XLOC_003601
TCONS_00007024 mRNA upstream 171629 36409457 ~ 36415700 (+) True XLOC_003600
TCONS_00007023 mRNA upstream 172065 36408636 ~ 36415264 (+) False XLOC_003600
TCONS_00007021 mRNA upstream 179463 36379293 ~ 36407866 (+) False XLOC_003599
TCONS_00007019 mRNA upstream 211256 36355348 ~ 36376073 (+) False XLOC_003598
TCONS_00007042 mRNA downstream 74871 36665359 ~ 36674376 (+) True XLOC_003615
TCONS_00007043 mRNA downstream 85111 36675599 ~ 36683726 (+) True XLOC_003616
TCONS_00007044 mRNA downstream 93371 36683859 ~ 36687267 (+) True XLOC_003617
TCONS_00007045 mRNA downstream 187125 36777613 ~ 36785073 (+) False XLOC_003618
TCONS_00007046 mRNA downstream 187126 36777614 ~ 36788797 (+) True XLOC_003618
TCONS_00007036 other upstream 4957 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007022 other upstream 201505 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007020 other upstream 218137 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007007 other upstream 1493607 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007005 other upstream 1531797 35048642 ~ 35055532 (+) False XLOC_003587
TCONS_00007048 other downstream 404206 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007061 other downstream 623620 37214108 ~ 37214223 (+) True XLOC_003626
TCONS_00007069 other downstream 773958 37364446 ~ 37364560 (+) True XLOC_003628
TCONS_00007077 other downstream 1048492 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007079 other downstream 1048494 37638982 ~ 37650964 (+) False XLOC_003630

Expression Profile


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