RNA id: TCONS_00007033


Basic Information

Item Value
RNA id TCONS_00007033
length 460
lncRNA type lincRNA
GC content 0.39
exon number 2
gene id XLOC_003607
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36564610 ~ 36567407 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGTTTGACTTCCACCAGACACACTTCAGAAACCCTTCATCAGTGTTAGTGACTATGAGGATCTGCTCATCATAGCATGTGAAATACCAGCTTCAGTCAGAGCTGATGTGTCCTGTAATCTCTACACTGGAGATGGAGCTCTTCTGTACAGCCATGACTCTCAGTTGAGTTCATCTGGAGATCAACATCTTTGTATGTTTAATCAAAATCTTAGTGATCTCTTGAGAAGATCAGGAAACATCAGACAGTTGAGCTGTGATTATTCACTCAAGACTAAACCTGACATCAGATCTCCACACAGtgacacatacacactcagagTTGTCTCAGGTTCAACACCAAACACCACTGAACAGAAAACTACAACAGCCGAGAAAACCTGTGAGTAACTGTGTTTATACAtcaaaaattttttatattttttacttaacCATAAATGTCCTTATGATTATTAGATGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194370

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007031 lncRNA upstream 3111 36554936 ~ 36561802 (+) True XLOC_003606
TCONS_00007030 lncRNA upstream 17644 36541551 ~ 36547269 (+) True XLOC_003605
TCONS_00007029 lncRNA upstream 36491 36519971 ~ 36528422 (+) True XLOC_003604
TCONS_00007028 lncRNA upstream 49590 36505674 ~ 36515323 (+) False XLOC_003603
TCONS_00007035 lncRNA downstream 6968 36574375 ~ 36577618 (+) False XLOC_003608
TCONS_00007034 lncRNA downstream 6968 36574375 ~ 36577618 (+) True XLOC_003608
TCONS_00007037 lncRNA downstream 19922 36587329 ~ 36590488 (+) True XLOC_003610
TCONS_00007038 lncRNA downstream 32835 36600242 ~ 36640855 (+) True XLOC_003611
TCONS_00007039 lncRNA downstream 44947 36612354 ~ 36613164 (+) True XLOC_003612
TCONS_00007025 mRNA upstream 75097 36477481 ~ 36489816 (+) True XLOC_003601
TCONS_00007024 mRNA upstream 149213 36409457 ~ 36415700 (+) True XLOC_003600
TCONS_00007023 mRNA upstream 149649 36408636 ~ 36415264 (+) False XLOC_003600
TCONS_00007021 mRNA upstream 157047 36379293 ~ 36407866 (+) False XLOC_003599
TCONS_00007019 mRNA upstream 188840 36355348 ~ 36376073 (+) False XLOC_003598
TCONS_00007042 mRNA downstream 97952 36665359 ~ 36674376 (+) True XLOC_003615
TCONS_00007043 mRNA downstream 108192 36675599 ~ 36683726 (+) True XLOC_003616
TCONS_00007044 mRNA downstream 116452 36683859 ~ 36687267 (+) True XLOC_003617
TCONS_00007045 mRNA downstream 210206 36777613 ~ 36785073 (+) False XLOC_003618
TCONS_00007046 mRNA downstream 210207 36777614 ~ 36788797 (+) True XLOC_003618
TCONS_00007022 other upstream 179089 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007020 other upstream 195721 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007007 other upstream 1471191 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007005 other upstream 1509381 35048642 ~ 35055532 (+) False XLOC_003587
TCONS_00006996 other upstream 2327822 34235356 ~ 34237091 (+) False XLOC_003580
TCONS_00007036 other downstream 14851 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007048 other downstream 427287 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007061 other downstream 646701 37214108 ~ 37214223 (+) True XLOC_003626
TCONS_00007069 other downstream 797039 37364446 ~ 37364560 (+) True XLOC_003628
TCONS_00007077 other downstream 1071573 37638980 ~ 37649103 (+) False XLOC_003630