XLOC_003615 (si:ch211-11c3.9)


Basic Information

Item Value
gene id XLOC_003615
gene name si:ch211-11c3.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36665359 ~ 36674376 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007042
GTAGTCTGTGTTACTTCCTAATTTACCCATTGTGTAAGTTTCATTGTTTTACACTCACTGTGATGGAGTTGTTCGTCTTCATTGTTTTTCAGCTCCTTATTGAGGTTCAGTCTAACAATGCTCCTACTGTACATGTATCTCCAGCTGTCTTTAGTGAATCCAGATCAGTGCAGATCAGCTGTGAGACGCCAGCAGATATTACAGTGAAGCATTGTGATTTCACAATAAACAGAAAACAGCTAGAAATAAAAGTCAGTCCTCTATGTGAGCTCAACCTCACTGGTGCTGAAGTGCTCAGACAGGCAGGTGGAAAATCTCCTCAATCAGTCAATATTACTTGCTGCTACACAATAAAAGGGAGACGCAAGAAAAAATCTTCTGATTCAGTTCCTGCCACAGTCACAGTTCTAGACCAACTTCAGAAACCCGTCATCAGTGTTACTGAATACGAGAATCACCTCGGCATAACCTGTAAAATACCACTTTCAGTCAGAGCTGACTTCACCTGTAGTTTTTACTATGAAGATGATGCTATTCTGGTCAACCGTGACTCTCAGTGGAGATCATCTGTAGAGAAACATATTTGTGTGTTTAATCCAACTCTTAGTGATCTCTTGAGAAGATCAGTGAAGAGCAGAAAGTTAAGCTGTGATTATTCACTGAAGACTGAACCTGACATCAGATCTCCACACAGTGACACACACATCATTGAAGCTCTTCCTCAGGCCAGACTGTCAGCATCTGCTTCAGTTCTTCGGGAATCAGACACAGTTGAGCTGAGCTGTGGGAATACTGAAGAGCTGAAGATGGAGATGTGTGTCTTCAACATTAATGGAAGAGAAACCTACTCAAATCCAAGCTTCTCATGTCAGCTCTCTCTCAATGCATCTCAGATCAGTGTTTGGTCAGAAGATCAGAGGTCATCAGTGAGAATAACCTGCTTCTACGTCGTGAAGAAGGGACAATTTAATGTACTATCTCCTCCCTCTGATCCAGTGACAGTCACAGTCCAGAtttcatCATCTACTACTGCACTCGTTACAATGACCATGACCATGGAAAGTACAGCATCAACTTCAACGTCAACTTCTGAAAGCACACAGATATACAGTACAGCAGCAGACCTCAATTCAAAGACAAATCTGTCAACCAGCAGAACCATCCAAACAACGTCTGATTCAACAGTTCACACTTCAACAGATCAACCAACCACAACAAAACACACagCAGCATCGACTCCTGAATCCACCACAAAGACAGAAACATCTGTTCCTTATGTTACTCACACTGAAGGCCAATTGCTTCATTTCTGTCTGGGCTCATCGGACTGATGCATCTTTGCTGTTTTATTAGTTCTGTTGATGACGTGAACTACACCTTGTGGAGAAAACATCTCTTTTTACTTCTATGTTCCTCAAAACATGTCACCTGCTTCATTACACTTAAGGCACCATTATAGCTATGTGTAccactttattttgtatatatctctgcaaatatttacatttttaaatgattacttttcTATTAGATGAAGcagtcaaaattaaacaaatgaaaaatgcatCTTAAACTTTCATTTTCCATTTTTTCTGAGTACTTCAACAACGGATAATTGACACTCGCTTTAAT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-426 No description available

Ensembl:

ensembl_id ENSDARG00000098699

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007042 True 1632 mRNA 0.40 12 36665359 36674376

Neighbor

gene id symbol gene type direction distance location
XLOC_003614 CR457444.3 coding upstream 6720 36657025 ~ 36658639 (+)
XLOC_003613 CR457444.4 coding upstream 8594 36653213 ~ 36656765 (+)
XLOC_003611 CR457444.6 coding upstream 24504 36600242 ~ 36640855 (+)
XLOC_003612 CR457444.10 coding upstream 52195 36612354 ~ 36613164 (+)
XLOC_003610 CR457444.12 coding upstream 74871 36587329 ~ 36590488 (+)
XLOC_003616 si:ch211-11c3.11 coding downstream 1223 36675599 ~ 36683726 (+)
XLOC_003617 si:ch211-11c3.12 coding downstream 9483 36683859 ~ 36687267 (+)
XLOC_003618 parapinopsinb coding downstream 103237 36777613 ~ 36788797 (+)
XLOC_003619 tkta coding downstream 315320 36989696 ~ 37035835 (+)
XLOC_003620 BX248521.3 coding downstream 320318 36994694 ~ 36994808 (+)
XLOC_003369 CR854846.2 misc upstream 20542277 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 23953363 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 23971096 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 23979760 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 23985331 12679732 ~ 12680028 (+)
XLOC_003623 NA non-coding downstream 462424 37136800 ~ 37170438 (+)
XLOC_003626 CABZ01065569.1 non-coding downstream 539732 37214108 ~ 37214223 (+)
XLOC_003628 CR936337.1 non-coding downstream 690070 37364446 ~ 37364560 (+)
XLOC_003634 NA non-coding downstream 1166881 37841257 ~ 37848711 (+)

Expression


Co-expression Network