XLOC_003603 (CU928222.3)


Basic Information

Item Value
gene id XLOC_003603
gene name CU928222.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36505674 ~ 36515323 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007028
ttattgtAACAAATGAAAATGAGAATTTAAGATTTATATTCTACGTCAGAAGATTCCAACACTTTGATATACTTGAAGGTTCTGATAATGTGTTTAATGCTATACAGACATATTGAGTTATTTAGTTTGTATACAGTCACTTTCCTTTCATTGCTTTCTACTTCCTCATAAGTATTGATGTGGGTGTCTGTACATCAGTTGATTTCTCTTTCATGTGACGCTGACATGATGCTGCACATCTTCCTCATCTCCATGCTGTTTCTTGAGGTTTTGCCTCAATCATTGTTCGAGCAGTTGTGGTTGACGACATCTCCATCAACAGCGCAGAATAACTCAAATATAAGATATGAAGCACAAGACAGATCATCTGTTCAACCTCACTACATCACAGATGCAAAAAAGAGGTTTTCTCTGGATAAGAAGCCGGAGATTACAGTAAATTATGACTCTCCAAATGGAGAATTTAGAGTTTACTGTGAAATACCAGGATCAGATAATGCTGGTTATACTTGTTTTCTCTTAATTGGAGACGAAAATAAACAAATTCTTAAGACTTATAAACCATCTGGACGAACACAGTGTGTTATTACGTTCAAGGAACATTATTTGCTTAATAAACTAATGTCAGTTAAGAGTAAAGTGATGAGCTGCAATTATTCTTCTGGAACTTCAATATCATCTGAACGTTCACCATACAGTAATAAATACAACCTAACAGCTTTTCTACCTGTACAAGTTCAGGTAACAAGTACAACAAAAGGATCAACATTATATTCAACATCAGTGAGTGAGGAGACTACTAAACAAAACCCAACAACACCAGACAATTCCATCTTTACCAACAATACTATGTTCATAAGCATTTCAACCATTCAGAATATCACAGCCACAAAGTCTAGCATGTGGTCTGACAGCACAATAAACTCTACATCGGaAACGGCTCAATCTTCACAACCTCTAAACATCACAATGAACATGACAGTGGTTGTTAATGATTCATCTGATGCACACAGAACACCAGCAACAAAATCGTGGATAATCATGATACTGACAGCCACCGGTGGAGGAATTGTGCTGAGTGGATTGTTGGGAATCTGTCTCTTCTGCATGAGACAGAAACCAAGGAAGATGAGTATGAAACCCTCAAAACCAGAGCAATATTCGGtgcCAGATGATAATGATGACAACAAGGAATGTTCTGAAGAAAATGAGgacaaacTGTGCCATGTTTACTATACCATTTCTGAAGTCCCGGCAGACACTGATAAGTTATACAGTCTGGCACAGATGCCAAATCAACCTCTGACTTTTTAATGTATACATAATATCATTCTAATTAAACTTATTGTCATATAAAGAGATTGTGTTTCACTTCCAATCAATCTTATAGggaaattaccaacctacgtcacatgGGTTCTACCACGCATaccagttgcaaaaa
>TCONS_00007027
ttattgtAACAAATGAAAATGAGAATTTAAGATTTATATTCTACGTCAGAAGATTCCAACACTTTGATATACTTGAAGGTTCTGATAATGTGTTTAATGCTATACAGACATATTGAGTTATTTAGTTTGTATACAGTCACTTTCCTTTCATTGCTTTCTACTTCCTCATAAGTATTGATGTGGGTGTCTGTACATCAGTTGATTTCTCTTTCATGTGACGCTGACATGATGCTGCACATCTTCCTCATCTCCATGCTGTTTCTTGAGGTTTTGCCTCAATCATTGTTCGAGCAGTTGTGGTTGACGACATCTCCATCAACAGCGCAGAATAACTCAAATATAAGATATGAAGCACAAGACAGATCATCTGTTCAACCTCACTACATCACAGATGCAAAAAAGAGGTTTTCTCTGGATAAGAAGCCGGAGATTACAGTAAATTATGACTCTCCAAATGGAGAATTTAGAGTTTACTGTGAAATACCAGGATCAGATAATGCTGGTTATACTTGTTTTCTCTTAATTGGAGACGAAAATAAACAAATTCTTAAGACTTATAAACCATCTGGACGAACACAGTGTGTTATTACGTTCAAGGAACATTATTTGCTTAATAAACTAATGTCAGTTAAGAGTAAAGTGATGAGCTGCAATTATTCTTCTGGAACTTCAATATCATCTGAACGTTCACCATACAGTAATAAATACAACCTAACAGCTTTTCTACCTGTACAAGTTCAGGTAACAAGTACAACAAAAGGATCAACATTATATTCAACATCAGTGAGTGAGGAGACTACTAAACAAAACCCAACAACACCAGACAATTCCATCTTTACCAACAATACTATGTTCATAAGCATTTCAACCATTCAGAATATCACAGCCACAAAGTCTAGCATGTGGTCTGACAGCACAATAAACTCTACATCGGaAACGGCTCAATCTTCACAACCTCTAAACATCACAATGAACATGACAGTGGTTGTTAATGATTCATCTGATGCACACAGAACACCAGCAACAAAATCGTGGATAATCATGATACTGACAGCCACCGGTGGAGGAATTGTGCTGAGTGGATTGTTGGGAATCTGTCTCTTCTGCATGAGACAGAAACCAAGGAAGATGAGTATGAAACCCTCAAAACCAGAGCAATATTCGGtgcCAGATGATAATGATGACAACAAGGAATGTTCTGAAGAAAATGAGGTGATGTGTTTTCAGCTAGTATTCAGTTACTCATTATTTCTCTATAACAGGGGTTCTCAATTTCGATCCTGGGGATcaggtgtcctgcaggttttagctacAACCCCAATCAAACGAGTAGGGTGAAGCTGCAGGTCTGAAGACCAAACTGCACGCTCAAACCTACACGCTCAAACCAGCACTTTCAGACCTATTGTTTTCTTAGGCAGTGCAACCTGCTGTTAGGTCAGGTAAAGTGGCAAGTCTCGAGACCCAACTGCAGATAAAGTCCTCGCTGCAGCCCGCAGCTTAATGACGTATTAGACCAGGTCTACTATGTAATGGACGAATGCCTAAACttccccctaaacccaaccgtcaaagTAGCATTGGCATTACCTTAAGGGGCTGTACAATGTCCACTACGCAGTGGACCTGGTCCAGTACATAATCATGGTTGCAGACTGCAGGGAGGACATCTTGCAATTACACGGTCAGACCTGAACTTTATAGCAAGTATAGCAACATCGGACAAGTGACCCTAATTCTAACGATAACCCTAACAATAGGTCTGGAAGTGCTGGTCTGAGCATGCAGTTGGGTCCCTGAGCCTGCAGGTTCATAATGTtgaatcagacacacctgggttagctaatcaagctctcccTAGGctctctagaaacatccttgcaagtgtgttgaggcaagctggagctaaaatctgcaggacaccggacctccaggactgagtttgtgaACCCCTGCTCTATAATATCATTACATTTTGTAGGTATTTATATTCtaatttgttttttaggacaaacTGTGCCATGTTTACTATACCATTTCTGAAGTCCCGGCAGACACTGATAAGTTATACAGTCTGGCACAGATGCCAAATCAACCTCTGACTTTTTAATGTATACATAATATCATTCTAATTAAACTTATTGTCATATAAAGAGATTGTGTTTCACTTCCAATCAATCTTATAGggaaattaccaacctacgtcacatgGGTTCTACCACGCATaccagttgcaaaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117364

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007028 False 1444 lncRNA 0.37 12 36505674 36515323
TCONS_00007027 True 2240 lncRNA 0.40 11 36505674 36515323

Neighbor

gene id symbol gene type direction distance location
XLOC_003602 CU928222.1 coding upstream 4868 36494094 ~ 36500806 (+)
XLOC_003601 ldlrad2 coding upstream 15858 36477481 ~ 36489816 (+)
XLOC_003600 cyb561d1 coding upstream 89974 36408636 ~ 36415700 (+)
XLOC_003599 atxn7l2a coding upstream 97808 36379293 ~ 36407866 (+)
XLOC_003598 sypl2a coding upstream 129601 36355348 ~ 36376073 (+)
XLOC_003604 CU928222.2 coding downstream 4648 36519971 ~ 36528422 (+)
XLOC_003605 CR457444.5 coding downstream 26228 36541551 ~ 36547269 (+)
XLOC_003606 CR457444.2 coding downstream 39613 36554936 ~ 36561802 (+)
XLOC_003607 CR457444.11 coding downstream 49287 36564610 ~ 36567407 (+)
XLOC_003608 CR457444.9 coding downstream 59052 36574375 ~ 36577618 (+)
XLOC_003369 CR854846.2 misc upstream 20382592 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 23793678 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 23811411 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 23820075 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 23825646 12679732 ~ 12680028 (+)
XLOC_003594 CR933559.1 non-coding upstream 358827 36052731 ~ 36146847 (+)
XLOC_003592 NA non-coding upstream 1190440 35298843 ~ 35315234 (+)
XLOC_003590 NA non-coding upstream 1311136 35189723 ~ 35194538 (+)
XLOC_003588 CT963136.1 non-coding upstream 1411952 35093605 ~ 35093722 (+)

Expression


Co-expression Network