RNA id: TCONS_00007005


Basic Information

Item Value
RNA id TCONS_00007005
length 797
RNA type processed_transcript
GC content 0.53
exon number 2
gene id XLOC_003587
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 35048642 ~ 35056607 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTTCTTAAAGACAAGAAGGCGATAAACCTTGAAGGCATGCCCGGTTCACAGATCAGACAAGTGCTTTCCACTTTACCTGCATGCATTAGGTTTAACACTTGAGGAAGATCACTTGAAGTGGCCATCAGTCAACACAATAAGCAGTTGTGTCTGCAGGAATCGGGTGACTGTCTGCGGGACCAGATGCGCTATATGATGCGCTCACTGCAGGATCTGAAGCATTTGCGGCGGAGCTGTGTGGCGCCCCCTGTTGGACCCCCAGTCAGACTGCGTGCTTGCAAACAACTGATCGCCCAGAGAGAACGACGGGCCCGTTTGAGGATCAGCGACGCCAGCGAGGCCAGTAGTTATGACTCTGCCTGCTGTTTGTCAAGCTCTCTTGAGGAAGAAGAGTCTGCGAGCGACCCATCAGCAGTCAGCTCCCCGAGCAGCGAGCGCAGTCTGGAGTTCGATTCAGGATACTCTGAGGCCTCCTGGCAGGATGAAGGAGTTGTGTTACGACGCACTAAAAACATTCGTGTATCCTCCACTGCATGTCTCCGCACTAACCAGCTCTCCAACACCCGAGCACGTCCTAAATCCACCTCCGATGCTTGCTTGGAAAGTTGGACGTCGTTCGAGACCGCAAGTGACCCCGAGGACTGGACTACATCACTGCTCACCCGCGGACGAAACCGGCAGCCGCTTGTTTTGGGAGACAACAGCTTTGCAGATCTCATTCACAACTGGATGGACTTGCCAGAATGTCCAGAACAGACTGAACTAAAGCACAGTTCTGGGCGCAGTTTTGCTAAA

Function

GO:

id name namespace
GO:0001502 cartilage condensation biological_process
GO:0051216 cartilage development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019901 protein kinase binding molecular_function
GO:0030291 protein serine/threonine kinase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060512-186 Predicted to enable protein kinase binding activity and protein serine/threonine kinase inhibitor activity. Acts upstream of or within cartilage condensation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including axis; digestive system; nervous system; neural crest; and presumptive structure. Orthologous to human INKA1 (inka box actin regulator 1).

Ensembl:

ensembl_id ENSDART00000103160

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008647 lncRNA upstream 487903 34551024 ~ 34560739 (+) False XLOC_003583
TCONS_00008649 lncRNA upstream 487903 34551030 ~ 34560739 (+) False XLOC_003583
TCONS_00008648 lncRNA upstream 487903 34551030 ~ 34560739 (+) True XLOC_003583
TCONS_00008645 lncRNA upstream 645835 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008646 lncRNA upstream 645835 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00007009 lncRNA downstream 134191 35189723 ~ 35194538 (+) False XLOC_003590
TCONS_00008650 lncRNA downstream 134332 35189864 ~ 35194538 (+) True XLOC_003590
TCONS_00008412 lncRNA downstream 243311 35298843 ~ 35315234 (+) False XLOC_003592
TCONS_00008411 lncRNA downstream 243311 35298843 ~ 35315234 (+) True XLOC_003592
TCONS_00007013 lncRNA downstream 997199 36052731 ~ 36146847 (+) True XLOC_003594
TCONS_00007004 mRNA upstream 6448 34921492 ~ 35042194 (+) True XLOC_003586
TCONS_00007001 mRNA upstream 133785 34824099 ~ 34914857 (+) False XLOC_003585
TCONS_00007002 mRNA upstream 141767 34824104 ~ 34906875 (+) False XLOC_003585
TCONS_00007003 mRNA upstream 170486 34824262 ~ 34878156 (+) True XLOC_003585
TCONS_00007000 mRNA upstream 269020 34760628 ~ 34779622 (+) True XLOC_003584
TCONS_00007008 mRNA downstream 115874 35171406 ~ 35185057 (+) True XLOC_003589
TCONS_00007010 mRNA downstream 141055 35196587 ~ 35238753 (+) False XLOC_003591
TCONS_00007011 mRNA downstream 141130 35196662 ~ 35238756 (+) True XLOC_003591
TCONS_00007012 mRNA downstream 308913 35364445 ~ 35441348 (+) True XLOC_003593
TCONS_00007014 mRNA downstream 1102602 36158134 ~ 36214655 (+) False XLOC_003595
TCONS_00006996 other upstream 811551 34235356 ~ 34237091 (+) False XLOC_003580
TCONS_00006995 other upstream 1221531 33818189 ~ 33827111 (+) True XLOC_003578
TCONS_00006992 other upstream 1619650 33428874 ~ 33428992 (+) True XLOC_003576
TCONS_00006982 other upstream 2452054 32596473 ~ 32596588 (+) True XLOC_003570
TCONS_00006976 other upstream 2856771 32191757 ~ 32191871 (+) True XLOC_003566
TCONS_00007007 other downstream 38073 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007020 other downstream 1299831 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007022 other downstream 1323816 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007036 other downstream 1526726 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007048 other downstream 1939162 36994694 ~ 36994808 (+) True XLOC_003620

Expression Profile

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