RNA id: TCONS_00007013


Basic Information

Item Value
RNA id TCONS_00007013
length 1977
lncRNA type antisense
GC content 0.39
exon number 4
gene id XLOC_003594
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36052731 ~ 36146847 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGCATTTAAAAGAAGTAAATATCTCCCACCCCCATGACAAGCGAATGGTTGTGCCCAGGAAGCTCGAGCTCGTGTTTAGGGAAGTGAATCTGTGCTTTGAGTGTCTTCTCGCATCTTCAAGGAAACTTTGATTTCTTGTCGTAAACCTTCTACCTCGTGTACATTTAACTTTTTAACCGATGCAGTCACTTTAAAAGCTAATACAGCCTTGACAGTTTTTTGAATGAATGATCCAGAGAGACTGTTAACCTCGATAAAAGCAGCTCTCGGTTATTCTTCCTCACAGACCTCAGTTGATATGTGGGAATGGCAGATTTTGAGTCTGGTGGGCTTCATCCTTTTAGGTCTTTTTCTCTTTGCTGTAGGCTATATCTTGTACTCCGGACTGACAAGTGAAATCATTATCAAGACTGGTTTACCCCCGGTCAGGAGCATCACTGTAGCCTATAAATACAGGACAGGAGCTTATAAAGACTGCGGCTCAGTCTTCAAAGAGAGCAGCAGCATTGGACCCAAGCTGTCATGCATTGGGATCTTCTATGACGACCCAAAGAAGGTTCCAGCTCAAAAGTGCCGCTATGCTGTAGGCAGTATTTTGAGTGAAGGTGAGGACCGACTCAATGAAGAACAGCAGAAGCTTTATGAGAATCACGGCTTCCGGGTTTTCTCATTTCCAGAGGTCACACATGTCGTCACGACCTCCTTCCCTCACCGAACCCCTCTCTCTATTTTCCTGGGAGTGCAGAGGGTTTATCCACAGCTCAACTACTACATCAAGGAAAGGAAATTGTGTGCACATCCATTTCTGGAGATCTATCGAGGGGGAACGATCCACTATATGAGTCCACTGGCCCGGCAGGGGGATTTCTATGTTCCTGAAGTTAGAGAAGCCCAAAGATGGTTACCGGGAAAATCGCCTGAAGAGGACGAGAGGACGGACATCACAGGTGCTGATTCCAACAGCGAGCGCAGTTCTTCTGTGAGCCAGCAGGACGCTTCACCTGCCCCGTCCAGCACGCGGACACACTCGCACCCGGACAGACAGCAATACTGGGACTTCGATCGTGTGGAGAGAAGCGACACCTCCAGCGTCTCTTCCTTCGAGGAGCTGGAGCTGGATTCGGACAGGTGCGAACACACTCTTCCAGCCCTCGCAACAGGCGGAAAACACAACCTGCAGGACCAGGACAGAGAGATCATGGTGGAGGAAGAGTAAGATGGAGAGCAGTGAATTGTGGGAAATGTGAGGGATGTGTTTTGACtttgatagttcactcaaaaatcaaAGTTCTGTCATTAGTTTTGTTCTTCCAAAAGGCTCATTTATACTTTGTTCGACCGTATTCaaattttacttacattttatgaAGTAACAATAGTAGTTACAATTATTACAATGCTTTCAATTAAGGTTTAGATTTcaccttttcttttttaaattttattttgtttgttttttggattaTTTTACTATATAATAATTAACTACAAAATTTCAGTAATTATTTTCTCCAgaaatcaccaaaaaaaaaatttatcaaaatgGTTTGGTGTTTTCcatgaaatatttaaattttatttagacATGATATGTCctgttactttttatttgttgtcattttaattttGCTGTAATTTCTTTAGCATAATTTGACTATaacaattaattatataattattatcattattttcccTTCTAGAATCCACAATACAAGTCGTTCATATGGATTCCaagaaatttaattttttttatttgaatgcaGTCATAATATTTTTGCAGTAATCTTTTTCttctaattttagtttttttttttttgtttttttttttgcataatttgactacataataattaattatataattattatctgtattttttctctccaaaaacaaaaatgtaaaaatgatccATATAGTTTGGTGTAGaaagaaatattatttttaattttatttggatgcagtcataatattttt

Function

GO:

id name namespace
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000125221

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008412 lncRNA upstream 737497 35298843 ~ 35315234 (+) False XLOC_003592
TCONS_00008411 lncRNA upstream 737497 35298843 ~ 35315234 (+) True XLOC_003592
TCONS_00007009 lncRNA upstream 858193 35189723 ~ 35194538 (+) False XLOC_003590
TCONS_00008650 lncRNA upstream 858193 35189864 ~ 35194538 (+) True XLOC_003590
TCONS_00008647 lncRNA upstream 1491992 34551024 ~ 34560739 (+) False XLOC_003583
TCONS_00007026 lncRNA downstream 347247 36494094 ~ 36500806 (+) True XLOC_003602
TCONS_00007028 lncRNA downstream 358827 36505674 ~ 36515323 (+) False XLOC_003603
TCONS_00007027 lncRNA downstream 358827 36505674 ~ 36515323 (+) True XLOC_003603
TCONS_00007029 lncRNA downstream 373124 36519971 ~ 36528422 (+) True XLOC_003604
TCONS_00007030 lncRNA downstream 394704 36541551 ~ 36547269 (+) True XLOC_003605
TCONS_00007012 mRNA upstream 611383 35364445 ~ 35441348 (+) True XLOC_003593
TCONS_00007011 mRNA upstream 813975 35196662 ~ 35238756 (+) True XLOC_003591
TCONS_00007010 mRNA upstream 813978 35196587 ~ 35238753 (+) False XLOC_003591
TCONS_00007008 mRNA upstream 867674 35171406 ~ 35185057 (+) True XLOC_003589
TCONS_00007006 mRNA upstream 996124 35050253 ~ 35056607 (+) True XLOC_003587
TCONS_00007014 mRNA downstream 11287 36158134 ~ 36214655 (+) False XLOC_003595
TCONS_00007015 mRNA downstream 11429 36158276 ~ 36216651 (+) False XLOC_003595
TCONS_00007016 mRNA downstream 33502 36180349 ~ 36214785 (+) True XLOC_003595
TCONS_00007017 mRNA downstream 84401 36231248 ~ 36237676 (+) True XLOC_003596
TCONS_00007018 mRNA downstream 96927 36243774 ~ 36249902 (+) True XLOC_003597
TCONS_00007007 other upstream 959009 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007005 other upstream 997199 35048642 ~ 35055532 (+) False XLOC_003587
TCONS_00006996 other upstream 1815640 34235356 ~ 34237091 (+) False XLOC_003580
TCONS_00006995 other upstream 2225620 33818189 ~ 33827111 (+) True XLOC_003578
TCONS_00006992 other upstream 2623739 33428874 ~ 33428992 (+) True XLOC_003576
TCONS_00007020 other downstream 208516 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007022 other downstream 232501 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007036 other downstream 435411 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007048 other downstream 847847 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007061 other downstream 1067261 37214108 ~ 37214223 (+) True XLOC_003626

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_08871809_08919326.mRNA True 2243 mRNA 0.42 10 CI01000306 8871809 ~ 8919997 (+)