RNA id: TCONS_00007010


Basic Information

Item Value
RNA id TCONS_00007010
length 4140
RNA type mRNA
GC content 0.50
exon number 20
gene id XLOC_003591
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 35196587 ~ 35238756 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGTCTTCACTGATGGACGCCTGCTGGAGGTAACCACAACACACTACAGCCATTTGCTTCACCCTGGAGTGGACATGGTCCATTGGGCCACACATTTAGTGACATGTGTCTGGATACAGGCTCTAATGTCTTCCGCATTGGACACTTGTCCCCCAACGGCCCCTATTTCTGTGGACTTCTCAGTGCCATATCCCATGCCTTACTATCAGACTCGCAACCCCATCCAGAACATAGTGACCAACTCCTTTTACAAAGAGGTCTACGTGGCCTCTCAGAACATTATTGAGGCACTTAACAACTCTTTGGATAAACTCTGGGAGCTCCGTACGGGACCCGTGGGCAGCCCGGAGTGTGAGATATGCGATTTGTGTGATATTGATAGAGATCCTTTTCATGAGGACACAGACAATGAGGTATTGCTCCTTGACACGTTCTTGATGTACTTGTACTCGTGTGGAAGTACCCAATATGGGGTTTGCTATTTCCATCAGCTCCGCGAGAATGGAAATCCTCCGGGGCCTTCGAAGTGTTTATTCCGGAAGAAGTTCAACTCTCCGCAGTTTTGTCCGGATTGTATAGCTAGTCCCTTCGGAACAAAAGTCTCCATGGTGGAGGAGGGTCAAACGGTGTACTTTTTTGTGGCGGCGACGGTGAATAATAGTGTGACTCAGAAATATGGACGCATGTCCATTTCTGTACGCCGACCAGTCGCGACGGAGGATGGTTTTTACACTGATGTCAGAGGACTGACAGTGTTGCCTGCTCTACAGCAGACATATGGCATTGAGTACGTCTACAGCTTTTACACACAGGACTTTGTCTACTTCTTGTCCGTCCAGCGAGAGAAAACAAATTTGGACTCTTCACCCTTTCAGACAAGACTCGGCCGTCTGCCACGTCATGAATGGGAGATGCGGCGTTATCGTGAAATTGTTTTAGAGTGTCGCTTCGAGCCCAAAAGGCGAAGGAGAAGCAATGTCAGCGAACCCTTTAAAGATGTGGTCTACAATGTAGTTCAAGCAGCCCACTTTGGCAAGGCCGGACGGGAGCTTGCAGATGAGCTGGGTGCTGAAGAAGAGGATGATATCTTGTATGGCGTGTTTGCTGTAACTGATGACTCAGGTGTTCCTGAACATGATTCAGCACTTTGTGCATTTCCGATGGATACAGTAAACACGGCAATAGACGATGGAGTGGAGGACTGCTGCAAGTCAGGACCAGAGCAGCTTTCCAGAGGCCTTTGCCATTTTCAGCCGTGTGAAAGCTGCCCACATGAGAGCATGGAGCACAACATGACATGCAGAGATCATCCCACGCTGGTGGCTCAGCCGTACTACAGAGTCGACCTGTTCAACAGACAGATGAGAGGAGTCCTGCTCACCTCATTGCTAGTCACCAGCATCGAGAACAAGACAGTGGCTCATATAGGCACCTCAGACGGGAGACTGCTGCAGCTCGTCCTGAGAAGGTCCAGCCCCATTATCTTTGCTAATTACTCACTTGTAGAGAACCAGAAAGTGTCGTCTACTGCAGCAGTTCTCTCTCAAAACCATCTACTGTTTGTGGTTGGAGATAAGATGATTCGGGTTCCTCAGAGGGGTCCAGGATGTCGGCACTTCCTAACATGTGCCATGTGCTTGACTGCACCCAAGTTTATGGGATGTGGCTGGTGCTCGGGTCAGTGCACATGGGCTTCTGAGTGCAGGGCACACTGGGTAAATGAATCGTGTCCACCTGTCATCACAGAGTTTTTCCCCAAGACAGCTCCCCCTGATGGTCAGAGTGAGTTGACTCTGTGTGGATGGGAGTTTCAGTCACCTCTTCGACCCGCCATCTCCACCAGAACTCACGAGGTGAAGCTGGGTGAAACCGCCTGTGTGGTCCAGCCACACAAAAGCAACTGCACACACTTGTTGTGTAAGATCCGCTCTGGAACAACAGAGACACTTTTTAAGCCACTGAACGTCACAGCTAAAGTGCATGAGGGTCAGGTTCCAAACATCACTGAGGTTCAGCCAGACTATGGGCCAGTGGACGGAGGGACTCTTATCACCATCACAGGGCCTTATCTGGATTCTGGGAAGAACAGGAAAGTCACTCTTGATGGAGAATCATGTCCAGTTCAAAGTGTATCTGTGGCCAGAGGAAACCTGTCCTCCATCGTGTGTCTCTCTCAGCCCGTGACAGAGGTGAAAGATGTGGTGCTGCGTGTCTACATCGATAAGTCCCGTGTCATGACCACTAAAGTCTTCCGCTACAAAAAGACTCCAGAAATTCTTGCAGTGCTGCCCGACTGCAGCTTTGACAGTGGGTCACGGATCATAATTGAAGGCCGGAATCTGGACTCCGTCTACAGAACTGTGGTCTACTTTAAGCCAAAAGAAAGCCACCTCAAACCGGTTTCCACTGAGTGCAGAGGTAAAGCCAAGCCCACCCGTATGGAGTGCATCACCCCTGTCTTCCCTCGAGATGAGACAGAAGAGGGCGAGCTTTCGTTTGATATGGACGGAGTGCTTGGTCTCTGGAAACATGACTTCTCCTATCACCCCTATGGCAAACCCATCCCATTCGAGACTGAAGGGCACATACTGAGACTCTACCCAGGCTTTGATGAAGTGTCCTTACATCACCAGAAGTTGAACCTTGTGAGTTCCTGCATGTCAATCACGATGACGGTGGGCGACGTTGACTGTGGTGGTAAAGTTTTGGATAATGAGATCACATGCAGGATCCCTAATAATCTCACCATTCCCAGTGAGGGTTTACCTGTAAAGGTAACGGTGAATGGGTACACGCATAATGTCGGCACTGTTATCTTGGTCAGTAACCACTATATGGTGGGCATTGTGCTCGGCATACTGGCAGCTCTAGTGACGGGTGCAGTTCTGGCCTTCATTGTGCTGAAAAACCTGAGGAAACAGAAAAAAGcTTCGCAGACAGAAAATCGGCTCTCTTATTTTTCCCACAGTCGCTCACGAAATAATAGCGTGGATTTGAGTTCCTTAGTAGACTACAGACGGGATCTGCCTCTCACCAGCATCACTGCACCCACTGGGGCCGTGGCATTCCCGGGCCTGGCCTACACAGGCACCCTAGACACCACCCTGACTCCTCTCATGCCCCCAGAGAAGATCTCTATCACCAGCTTCCGCCCTGAGCTGCTGGAGGAGGTGAAGGACGTGCTGATTCCAGCCTCCACACTCAAAGTTCACCACCACCAGATCATCGGAAAAGgACACTTTGGGACAGTTTACCACGGTTACCTCACTGACCACAACAACCGAGAAATCCACTGTGCTGTGAAGTCTCTTAACAGAATAACAGATGTGGAAGAGGTGGAGCAGTTTCTAAAAGAGGGCATCCTGATGAAGGGCTTTCATCACAGTAATGTTCTCTCTTTGCTGGGCATTCTGCTCCCAGAAGAGGGACTTCCTTTGGTGGTCTTACCTTATATGAAACACGGAGACTTGCGTCACTTCATTCGCTGTGAGAATAGGAATCCCACAGTTAAGGATTTAATAGGCTTCGGGCTTCAAGTTGCTAAAGGAATGGAGTATCTGGCACAAAAGAAGTTCGTACACCGGGATCTGGCAGCACGCAATTGCATGCTTGATGAATCCTACACAGTAAAGGTTGCAGATTTTGGCATGGCCCGAGATGTGCTGGAGAAGGAGTACTACAGCGTCCAGGATCACAGGAAAGCCAAATTACCCGTCAAATGGATGGCCATCGAAAGCCTTCAGACGCAGAAGTTCACCACCAAGTCAGATGTGTGGTCTTTTGGGGTTTTAATGTGGGAGATGCTAACAAGAGGAGCCAGTCCATATCCTGAAGTCGACCCATACGATGTTACTCATTACCTCCTGAAGGGACGACGACTGCCTCAACCACAGTATTGTCCAGATCCACTGTTTGCCATTATGCTTCAGTGCTGGGACCCTGACCCTGAGAAGAGGCCGAGCTTCTCCACACTTGTGTCTGCAGTGATGAGTATTCTGTCCAGTCTTGAGGGAGAGCACTACATCAGCCTGAAGGTGACATACGTCAACCTGGACCAACCCCGTCCTTACCCTGCCCTAACAGACTCTGCCGATGAATACGATTCGTCAGATGACAATGAACCAGGCTCAGTATCAAGC

Function

GO:

id name namespace
GO:0006909 phagocytosis biological_process
GO:0033674 positive regulation of kinase activity biological_process
GO:0016477 cell migration biological_process
GO:0007275 multicellular organism development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0030282 bone mineralization biological_process
GO:0051897 positive regulation of protein kinase B signaling biological_process
GO:0007399 nervous system development biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0009925 basal plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071218-3 Predicted to enable transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within bone mineralization. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in basal plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in corpuscles of Stannius and pronephros. Human ortholog(s) of this gene implicated in nasopharynx carcinoma. Orthologous to human MST1R (macrophage stimulating 1 receptor).

Ensembl:

ensembl_id ENSDART00000014018

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007009 lncRNA upstream 2049 35189723 ~ 35194538 (+) False XLOC_003590
TCONS_00008650 lncRNA upstream 2049 35189864 ~ 35194538 (+) True XLOC_003590
TCONS_00008647 lncRNA upstream 635848 34551024 ~ 34560739 (+) False XLOC_003583
TCONS_00008649 lncRNA upstream 635848 34551030 ~ 34560739 (+) False XLOC_003583
TCONS_00008648 lncRNA upstream 635848 34551030 ~ 34560739 (+) True XLOC_003583
TCONS_00008412 lncRNA downstream 60090 35298843 ~ 35315234 (+) False XLOC_003592
TCONS_00008411 lncRNA downstream 60090 35298843 ~ 35315234 (+) True XLOC_003592
TCONS_00007013 lncRNA downstream 813978 36052731 ~ 36146847 (+) True XLOC_003594
TCONS_00007026 lncRNA downstream 1255341 36494094 ~ 36500806 (+) True XLOC_003602
TCONS_00007028 lncRNA downstream 1266921 36505674 ~ 36515323 (+) False XLOC_003603
TCONS_00007008 mRNA upstream 11530 35171406 ~ 35185057 (+) True XLOC_003589
TCONS_00007006 mRNA upstream 139980 35050253 ~ 35056607 (+) True XLOC_003587
TCONS_00007004 mRNA upstream 154393 34921492 ~ 35042194 (+) True XLOC_003586
TCONS_00007001 mRNA upstream 281730 34824099 ~ 34914857 (+) False XLOC_003585
TCONS_00007012 mRNA downstream 125692 35364445 ~ 35441348 (+) True XLOC_003593
TCONS_00007014 mRNA downstream 919381 36158134 ~ 36214655 (+) False XLOC_003595
TCONS_00007015 mRNA downstream 919523 36158276 ~ 36216651 (+) False XLOC_003595
TCONS_00007016 mRNA downstream 941596 36180349 ~ 36214785 (+) True XLOC_003595
TCONS_00007017 mRNA downstream 992495 36231248 ~ 36237676 (+) True XLOC_003596
TCONS_00007007 other upstream 102865 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007005 other upstream 141055 35048642 ~ 35055532 (+) False XLOC_003587
TCONS_00006996 other upstream 959496 34235356 ~ 34237091 (+) False XLOC_003580
TCONS_00006995 other upstream 1369476 33818189 ~ 33827111 (+) True XLOC_003578
TCONS_00006992 other upstream 1767595 33428874 ~ 33428992 (+) True XLOC_003576
TCONS_00007020 other downstream 1116610 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007022 other downstream 1140595 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007036 other downstream 1343505 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007048 other downstream 1755941 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007061 other downstream 1975355 37214108 ~ 37214223 (+) True XLOC_003626

Expression Profile

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