RNA id: TCONS_00007012


Basic Information

Item Value
RNA id TCONS_00007012
length 5850
RNA type mRNA
GC content 0.39
exon number 11
gene id XLOC_003593
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 35364445 ~ 35441348 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAAAATCCCGCCAGCGCGAAACAGATGGGAAGGCATCCGCGGAATTTGCGACCGTTACCGTCCAGTGAATAACCGTCAAAACTTAAcggacaccgacaagaagttgaGCTCGTCCGGAAGACTTCTGGACTGAGAACTTGAGGACATTTCACGCTTGTTCACGACTGGAAAAGGGCAGGTGGGCCATGCCATTCGGCTGTTTAAAACCTGGGGAGAAGAAGGACTACAACAGTCCTACAGAAATCACAGACAAATATGATCTGGGGCAAATTGTTAAATCGGAGGAGTTCTGTGAGATATTCAGGGCGAAAGATAAAAACACACTGAAAATGTACACCTGCAAAAAATTCCTGAAGAAAGATGGAAGAAAGGTGCGGAAGGCTGCCAAAAATGAGATTGTCATCCTAAAGATGGTCAAACACCCCAACATTCTCCAGCTGGTGGATGTATATGAGACCCGGAAAGAGTACTACCTCTTCTTGGAGCTAGCCACAGGTCGGGAGGTGTTCGACTGGATTCTGGATCAAGGCTATTATTCCGAGAGGGACACCAGTAATGTTATCAGACAGGTGATGGAGGCGGTGGCGTACCTGCACAGCCTGAAGATCGTCCACAGGAACCTTAAGCTTGAGAATCTGGTGTACTACAACCGACTGAAACATTCGAAAATAGTCATCAGTGATTTCCATCTGGCAAAACTGGAGAATGGACTCATCAAGGAGCCCTGTGGAACCCCTGAGTATCTGGCCCCAGAGGTTGTTGGAAGACAGAGATATGGTCGACCTGTGGACTGCTGGGCCCTTGGTGTGATCATGTACATACTGCTCTCTGGAAATCCTCCATTTTACGATGAAGCAGATGATGATGACTATGAAAACCATGACAAAAACCTCTTCCGGAAGATTCTTGCTGGAGATTATGAGTTTGACTCACCTTACTGGGATGAAATCTCAGACTCTGCTAAAAACTTAGTGTCACGTCTTATGGAGGTGGACCAGGACCAGAGACTGACTGCACAAGAAGCCATCAACCATGAATGGATATCAGGAAATGCTGCATCAGACAAGAACATCAAAGAAAACGTGTGCGCTCAAATTGAGAAGAATTTCGCCAAAGCAAAGTGGAAGAAAGCGGTGCGGGTCACAACCATGATGAAGCGTCTCCGGGCACCAGAGAATCagacagcagcagcaacagcaccTGCAGCAGAAGCTGCTGCAGCATCTCCCAGTGAAGCCGATCCTGCAGCTGGAGCTCAGGAAACCCCTCAAGCTGCATCAGAGGCCTCCACAGCCCCGTCCAGTACTGCTGAAAGCCTCTCGGCAAGCATAGAAGTCCCTGCCGTGGAACCTGCCAATGCAGAAGCAGCGAGCGCAGCCGTCCAGCCGCCAGCTGAGCCTGTTGTCCACGTCCCAGAGCCCGAACAGCCCGTTCCCACATCACGATGCAACGGAGAGGCTTCAGCTTTGGACACAGTGGAGGAGCAGAGCGGCTAATCTTGCTAACTCTACCACCCTGGGttagacccacacacacacatgtacatatgCAGCAAGCATGCTAATACTGAAGATTCCGCAGCACATAGCATTAAACACGCTCTCTCACGAGCCGACAATTTCCCAGCATACATCTGTTTTCTATTGAATCACAAAGCTGTGACGCAACGGCTCCGGCCACTTTatgtaaaagaagaaaaaaaaagctgttttctgCTTACATTAAGCCGAGATTGGAAACTCTAGCACTGATCTGCGTCCATGTTTTAGGGTAGATTTATCATTTTATAAAGTTACTATTTATTTGCATCGCAGCTCAAGAACCACAGAGAGACAGCTTCAGGCGAAATGTAAAGTTTCTGTAAATAGCTTCCTTACCTCTGTAGATTAGACGTAGCCAAGAACagcatgctttttcagatctgcTGTTTACGACATGTCCGGCTTCAGCTTTACTTTTCATTATCAAACACAAGCTCATGAAGCGTCGGGGATTTACGTGCAAAACACTTCTGCAGCAACTAAAGCGGCTCAATTCATCTTGTAATGGTGTTTTAGTGGTTGAGACATGTGGCCCAATAAACGGAGCAGAGCAGGTATCATTAATACCGCAGATCTGCTTGGTAGCTAGCCACATGGACAGTGGAAACCGTGATCTGTACTTATGTAATATAGACACATTTACATACATTGTACATGTTTTGAAGAAGATACATGtccattttaaaaatacacaaccATATTATTTTGAATAGGATTTCACGAGGCATTAATGAACATGCCTTGTGTTGGGTTAAATATACTCAAAATCGCGATAAATCTACTTAAAAACTTACTTAAATTTACATACTTCCTTTTACgatgaaataaatgtattattgcattAAACAAATAGTCTTGACTCTTGAAAATAAAAGtatgaaaacataaaatatatatttattgtttaagtCAAACaaatctttttctgaattgcaAATGCTTGAcaggaattatatatatatacacacatcgtcatatttattaatatagtgcTTTATATAATACAGATTGTATCAAAGAAATttcattgttaatatttttttctctttagcaaATGTGAATTAGGTCAGATTATAAAACAATCTCCATGAAGTAAAGTGCTGCaggaaagacttttgtttttgcatttttgaatgCCTGAAATAAAGTCTGGTTTGTCCAGGGTCAAATAATTCTGCTTCTTCAACAAGATAGATCTGTTAAGCCTTTACTGGTCTTTAAAAGGTGGCTAACAAGTGGCTGCATCTAACAAACAGAAGTTATTAACAGCGTGTGTATATGCAGTACAGTtaaaacaaaactattagccctacTGTAATTTtgaataggttttttttttaattccaagacatttttaaaattatttttaataactaatttctttagtTTTCATAATGattacagtacataacattttccAAGATACGAGTTTTCAGCTTAGTTAAAAGcctaactagggtaattaggcaagttaggataattaggcaagtcattagacaatagtggtttgttctgtaatcaacttcttttttttaaatatatatttttatttccagcaaaaaaaaaaaaaacaaaacaaacaagacttttttcagaagaaaaatataatagaaaacactgtgaaaaatgttcttgctctgttacacatcacttgggaaatatgtgaataataataaaaacaattcacaGGAGGGATAATATGTTTATCTTACCTTTTTTAATCTTCATCTCTCTCTGTAGAAATGATAGCAGCCGTTGTACAATAACTGAAACAGCCAGTTTACCGACACCAATTAAACAGCACAGCACCGGCTGACATCGCAAGTCATGAGaccaaacagaaaaacaaattatttttcagCTTCTCAATGCTCATGATCACACTATAGTGAAAAGTACACAGTAAAAAGTGATctattttaaagtgagtaaacccattgcctcgAAGGTAGCATCAATTGAATTAACCTTTAtgtctatagcgcttttacaatatagactGTGTGAAAGCagattaacatagaagttctaataaattgagattgtgtcagtccagttttgaaAGTCAggttaattcagttcagttcacagctgaaaatccaaacactgaagggcaaatccatcaatgtgcagctccacatgTCCCAAACCAATCAAGGCTGTGGCCTTCAACAATTGACAAAAGTTAACTCAACTTAGATAGGGAGTAAACCCACTGTAACTTTGAACTGTTAatatcatttattcatgcatttttctttggcttagtctatcaggggtcaccacagcggaatgaaccgccaacttttccggcatatgttttacacggcagattccctcccagctgcaacccagtactgggaaacacctatacactctcacattaacaCCCACTAAGGCCACTTTAGTTCATCGAATTCATTTAtgccgcatgtttttggactgtgagggaaaaccggagcaaacccacgccaacacagggagaacatgcaaactccacacagatatgcccaCTGGCTCAGCCAGAACTTAAACCTGCAACCttttttctgtgaggtgacagtgctaactactgagccaccgtgacaccctaacTGTTAAGTTGATtaacttaattattataattatgcagttcatttacttaaaaatgttATGGAaaagggtttactcactttaagtcaactaatcattttaaaagcaacagctttactcacttattttaagtcaacttttTTGTGTATTCAAACTCACTGACCATAGCGTAGATGATGCTTAGCTTACCTTTTTACTTCTGCCTTTTGCCTGTCTTGTTCTGACTTTTGtagatgtttattattattattattattattttattttttttttattttatttaattttttagagGGAACCAAGATGTAGTAACTTTGACCTACAAAAATCCTCCCTGCAGCACTCTATTGTTTGTGAAcgataaacatttattaatgctaATGAAATCTAGCCCTGTTAATCTGATCATAAACATGAACAATTTTAATTAttagttatattttaatttttaattcaggGACATTTATATTGTCTTGGAGCCAACAAATATTAGGCAGAATAAAGCATTCTaagttgtttttgtgtgtaaatgggaattttttttttgacaacttttttttttaacattgtactGTAAACAAACCCTCATTTTAAAAGTCTCCCATCAGCAAGATTTTGCAATTTTATACAGATTTTTCTCATTCATGCTTCACTAGACACATCTGTAACTCATTCTGCCAGTATTTACTCATTTCAGTTTATGCGTTTTTAAATTTGACAACTAATTTTGTGCTGTCCTAAGTTCAGTACACGAACATGTTTTAGCACAGAAACGGCAGGTGATGTAGGATTAAAAGAGCATATTTATTGAAAGCAAAAGAAACGGTCGACCTCTTAATATGAGCAATAGTCTACAACTGCGATACTGTGATGCTAACGTCAATGTCGGTGTCCGTCTGAGCGCTCAATTTCTGATTGACGTGTCCTACGTTAAAGTTGACAATAGTAATGTTATCCAGGTCAAAACTTAAGCAGGACAGATGAAGCCAGTGCAACTATCGGACAATTATTAACAGCCTGTCACGAACAAGAGCAGTTTCCCCTCCGGTGGCCAATGATCTGTAATTGTTGTGCAGCGGCGACATACTGTAATTTTCCAAACATCATAGGAGTCAGTGGAGGTTTGACTGAAGAAGGCCTTGATCTGCAATTACGCTGTCAGTGGTCTATTGATTTCAAGATGACACACCAcatggattgtgtgtgtgtttgcgtgtgtgtgttctgttACAGGTTTCTATTGTAGTCAGCTTAGATCTCACATGTGTCATTGTCATTTCTTTTCTCTTTACTATTATATTACCTTATGAACCCTATGCCATACCTTGATCTGTTCTATCTTTGAgatgttatttgtttttctgtCACTGATTTCTTACTAAAAGCTTAAACTGGTgagacctaaaataaaaaaaaaacgagtgGTAAACGATGTTTCATGTAGGTCTGAAAGTTTTTCTATAGGATTTGTGTATACTAAAACCGCAACTAGATACTGTGTTACACAACTCAAAGCAATTTTTTTGAAATAGTGCTTCACTATTGCCTTTGGTGTTCGATGTGTGTTGATTTCCACATTCTCTCTGATGTTTTATCTCAGTGTGGTTGACTGTGAACCTGTGAATACACTGAGGACTGGCCTCTCTCCACTTTAACCTCTGTATTCTTCAACTGACTTTCATGCTTTCAGAATAAACACATCCTGAATGATTAAA

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1140 Predicted to enable calmodulin binding activity and calmodulin-dependent protein kinase activity. Predicted to be involved in peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasmic vesicle membrane. Is expressed in nervous system and neural tube. Orthologous to human CAMKV (CaM kinase like vesicle associated).

Ensembl:

ensembl_id ENSDART00000125766

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008412 lncRNA upstream 49211 35298843 ~ 35315234 (+) False XLOC_003592
TCONS_00008411 lncRNA upstream 49211 35298843 ~ 35315234 (+) True XLOC_003592
TCONS_00007009 lncRNA upstream 169907 35189723 ~ 35194538 (+) False XLOC_003590
TCONS_00008650 lncRNA upstream 169907 35189864 ~ 35194538 (+) True XLOC_003590
TCONS_00008647 lncRNA upstream 803706 34551024 ~ 34560739 (+) False XLOC_003583
TCONS_00007013 lncRNA downstream 611383 36052731 ~ 36146847 (+) True XLOC_003594
TCONS_00007026 lncRNA downstream 1052746 36494094 ~ 36500806 (+) True XLOC_003602
TCONS_00007028 lncRNA downstream 1064326 36505674 ~ 36515323 (+) False XLOC_003603
TCONS_00007027 lncRNA downstream 1064326 36505674 ~ 36515323 (+) True XLOC_003603
TCONS_00007029 lncRNA downstream 1078623 36519971 ~ 36528422 (+) True XLOC_003604
TCONS_00007011 mRNA upstream 125689 35196662 ~ 35238756 (+) True XLOC_003591
TCONS_00007010 mRNA upstream 125692 35196587 ~ 35238753 (+) False XLOC_003591
TCONS_00007008 mRNA upstream 179388 35171406 ~ 35185057 (+) True XLOC_003589
TCONS_00007006 mRNA upstream 307838 35050253 ~ 35056607 (+) True XLOC_003587
TCONS_00007004 mRNA upstream 322251 34921492 ~ 35042194 (+) True XLOC_003586
TCONS_00007014 mRNA downstream 716786 36158134 ~ 36214655 (+) False XLOC_003595
TCONS_00007015 mRNA downstream 716928 36158276 ~ 36216651 (+) False XLOC_003595
TCONS_00007016 mRNA downstream 739001 36180349 ~ 36214785 (+) True XLOC_003595
TCONS_00007017 mRNA downstream 789900 36231248 ~ 36237676 (+) True XLOC_003596
TCONS_00007018 mRNA downstream 802426 36243774 ~ 36249902 (+) True XLOC_003597
TCONS_00007007 other upstream 270723 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007005 other upstream 308913 35048642 ~ 35055532 (+) False XLOC_003587
TCONS_00006996 other upstream 1127354 34235356 ~ 34237091 (+) False XLOC_003580
TCONS_00006995 other upstream 1537334 33818189 ~ 33827111 (+) True XLOC_003578
TCONS_00006992 other upstream 1935453 33428874 ~ 33428992 (+) True XLOC_003576
TCONS_00007020 other downstream 914015 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007022 other downstream 938000 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007036 other downstream 1140910 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007048 other downstream 1553346 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007061 other downstream 1772760 37214108 ~ 37214223 (+) True XLOC_003626

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_08508559_08518460.mRNA True 2209 mRNA 0.46 10 CI01000306 8508559 ~ 8519351 (+)