RNA id: TCONS_00007009


Basic Information

Item Value
RNA id TCONS_00007009
length 3508
lncRNA type inter_gene
GC content 0.36
exon number 5
gene id XLOC_003590
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 35189723 ~ 35194538 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGTCATGTGTATCTTGCAAATGTCAAAACACACAGAGGAAGACATTATGCTTtaacgtgtaaaaaaaaaaaaaaaaacacacaccctGACCAATCCACTATATAATAATCTTTCATTGTCAGTGTGACACTCTTTGGCTGAACCATGGCGCTGCAAATCatctctgtgtttgtttttactcTGTTTTTTCCTAAAGCGCTGACACTGAAGTGTTACAACTGTGACGTGCCATCTTCAAATTGCTCCCAAAAAACCTGCAATTCAAGCTCACATTGCTTCTCCAGTATCAAATATATTGGTGGTATTGATAATGGTATTTTCACGTGGGATTGCGCAAATGCCCTTTATGATAATTGGACTGTAAATTTTGGAAAACTTGGATACACCATGAAAGTTTGTTCTTCAGATCTGTGACAAAAGATCTTCAGAACAATGCTACAACagACTCAGCTAATGAAAAGAGCTGCTACACCTGCAACGGCACAGACTGCTCTCAGACAATGTCTTGTAAAGGTGATGAGACCAAGTGCATCACTGCAACAGGTGCCATCTACCCTACTTTAAAAGGATGTGCAAACCAAATTGTCTGTGCTAACACTACTGTAGTGGAACATTTCCTATCCCAGTATGGCTTTGCAAACACTAGTTTGTCATGTTGTGATGGAAACCTGTGTAATAACGGGTAAATTCTGAGGCAGGGAGCTGTGCTGCTGCTCATACCAGTGCTTTCTCTTCTTTTCTCCATCTGAGATCTATTTTTAggagatttttattattttgttataatttaaaTGCTTTTCTTTAAACTAACACTGaaccaattaattttttttgcaaatggaaactcattcaaatgttttaaatgactaTAGGATAAGTGTACTTTTGTGCTTCTAGTCATTTAAAAATAAGATGGTGTGTATAATACATAGctataaaaacatttacatatttttataggCATAATTTTGGTGAAACAAAATAATAGTTGACtcctaattaaaattttattaattaaatcaattttttttattcataaactatgTTGCCAAATGGTTTGGAACATCTGCACATGCACGTTAATGACATCCCAATCTTATTCAGTAGGGTTCAATATGGAGTAGGTCTAAATTTTGCAGCTGCAAACTGGCTTCAACTTATCTGGAAATTATTCCAACATGGTTTAAGAGTGAATGTTTCTAGAAATTTTGAACATTCTTCTTGAATAGCATTTGCGAAGTCAGACACTGAAATTGGGTGAGAAGGTCTGGTTCATCATCTCCGCTCTAATTTATCTCAAAAGTGTTTAGTTGGGTTGAGGTCAGGACTCTGTGCAGGCCGGTAAATTTTCTGGACACCAAACTTGCACATCCATTTTTGCTCATTCATTGCTCATTCTTCTTTATAGACTTTGCTTTGTGCAATGGTGTGCAGTCATGTTGAAACATGAAGTGGTCATTCCCAAACTTTTCCCACAAAGTCGGGACGGGAGCATGAAAATATACAgaaaggctgcgtccgaaaccacattCTTCCATACAATATAGTtctctaaaatcagtatgtgagccgagtagtatgtccgaattcaaagaattcgaaaatcagtatgcaagaagtacccggaagACTTACTAcatccggcgagattctggagtgtgcatcccatgcaccctgtgctatcccataatgccccgcgagagaattcatgaatggaagtgaagcgatgcaactgacgcagataggtcacgtgaccatgacaaaatggcggatgtagtacgtccaaattccattcatatttttcacattcacaccgtatagaacgtacttttctaatggccgagtagtacgtttaaaattaaatacagtacctcttgagtagtaggcggtttcggacgcagccaatgtcTTAGTATGCTTAAAGAGTGCCTTTCAGTAGAGCTGAAGGGCCAAGCCCAACCTTTTAAAAAACAACCTTACACCATAAGCCTCCTCTGATGCAATCTGGAACATACCGTTCTCATGGCAAACACCAAACCCAGATTTTTCCATTGGATCGCCAGACAGTGAAGAGTGGTTTGTCACTCCGGAGAGGGTTTACTCTGCTCTTGAGTGCAAGATGGCGGCATGCTttacaccagtgtttctcaaccacgttcctggaggaccaccagctctgcacattttccatgtttccttaaccaaacacacctgattcagatcatcagctcattagcagagactgaaagacctgtgatgggtgtaacagacaaaggagacatccaaaccatgaagtgttggtggtcctccaggaacctggttgagaaacactgctttacacCATTGCATCTGATGTTATGCATTGCACTTAGTGATGTAAGGCTTAGGTTTAAATGCTTACAGTTGAAACCTATTTAATTAAGCTTTCGACACCTGTTTTTTAGCTTATCTGAAGGCCACAAAATTTGGAGGTCTGTTGGAATTGACTCTGTAGAAAGCAAACGCAGACCCCActccattttttaaatttcaattcACAACATGCAGATGAATGCCAACAAACAAAATTGGTTAGGACTTGTTGAAACAATGTGTTACCCCTGTcagcattttaattaattaattaattaattaacatactTCATTTTTTACACATCTGGACATGGAAGGGATTGCAACATCGATTCAATGATTCGAAAAGGTGTCCCAAAATGGTTGGCAATTAGTGTATGTTTtagaaatatattgttttgtagcTCAGTAAAAATCATCATTTCTTTTGATCTCGCTTTATAGTAATGTACAACTCATGCTATtgataaaccattaactaagacttttagctttaTACACTAAGTTTGGGTTGGGTGGTGGGTAGAATTAGGCATTGTACTTTATGAGAAGaactaataataaacagttaatatcatAATAATAGACAAGTAATGAGTCAgtagttgtgtaaattgtttcTTATAATATTCTTTTTGCAGTGAACATGTTGTGTGATGTTGACGCTGTTTTAAATTCagtggattttattttatataattgttgAGAAATATTTTCATGACTGCTATACTGGTATATTCTCTTGtgtcatttatttgttatatttgttaaattaatcaaattaaacatTACTATGGCAAAGCACTTTTTAATATTAAGTCGGTTACGTTATTTAAAAATCCTTGTgacctaattaatattcatgaggaaTGCCGTTTTGTACTTGTGCTTACCTCCTTTTGTCTGTCTGAGATCTATCTATTTTTATGGTTTTGTTATAATATAGTTGCTTTTTTATACATGTAAAAGACTCTTAAAATTGAACTTCTTTAGTAAATGCTCTcgcataaaaatgttttaaatgactgCATTTCTAATATCAAATTAACTTTTGTGCTTATTATCATGTAGGCTAaattttggttgattttattttggttttattaaaatacatattatcACGATCACTAGATTGGCATATACTGCTGTGTAAt

Function

GO:

id name namespace
GO:0140014 mitotic nuclear division biological_process
GO:0070925 organelle assembly biological_process
GO:0005876 spindle microtubule cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008647 lncRNA upstream 628984 34551024 ~ 34560739 (+) False XLOC_003583
TCONS_00008649 lncRNA upstream 628984 34551030 ~ 34560739 (+) False XLOC_003583
TCONS_00008648 lncRNA upstream 628984 34551030 ~ 34560739 (+) True XLOC_003583
TCONS_00008645 lncRNA upstream 786916 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008646 lncRNA upstream 786916 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008412 lncRNA downstream 104305 35298843 ~ 35315234 (+) False XLOC_003592
TCONS_00008411 lncRNA downstream 104305 35298843 ~ 35315234 (+) True XLOC_003592
TCONS_00007013 lncRNA downstream 858193 36052731 ~ 36146847 (+) True XLOC_003594
TCONS_00007026 lncRNA downstream 1299556 36494094 ~ 36500806 (+) True XLOC_003602
TCONS_00007028 lncRNA downstream 1311136 36505674 ~ 36515323 (+) False XLOC_003603
TCONS_00007008 mRNA upstream 4666 35171406 ~ 35185057 (+) True XLOC_003589
TCONS_00007006 mRNA upstream 133116 35050253 ~ 35056607 (+) True XLOC_003587
TCONS_00007004 mRNA upstream 147529 34921492 ~ 35042194 (+) True XLOC_003586
TCONS_00007001 mRNA upstream 274866 34824099 ~ 34914857 (+) False XLOC_003585
TCONS_00007002 mRNA upstream 282848 34824104 ~ 34906875 (+) False XLOC_003585
TCONS_00007010 mRNA downstream 2049 35196587 ~ 35238753 (+) False XLOC_003591
TCONS_00007011 mRNA downstream 2124 35196662 ~ 35238756 (+) True XLOC_003591
TCONS_00007012 mRNA downstream 169907 35364445 ~ 35441348 (+) True XLOC_003593
TCONS_00007014 mRNA downstream 963596 36158134 ~ 36214655 (+) False XLOC_003595
TCONS_00007015 mRNA downstream 963738 36158276 ~ 36216651 (+) False XLOC_003595
TCONS_00007007 other upstream 96001 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007005 other upstream 134191 35048642 ~ 35055532 (+) False XLOC_003587
TCONS_00006996 other upstream 952632 34235356 ~ 34237091 (+) False XLOC_003580
TCONS_00006995 other upstream 1362612 33818189 ~ 33827111 (+) True XLOC_003578
TCONS_00006992 other upstream 1760731 33428874 ~ 33428992 (+) True XLOC_003576
TCONS_00007020 other downstream 1160825 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007022 other downstream 1184810 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007036 other downstream 1387720 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007048 other downstream 1800156 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007061 other downstream 2019570 37214108 ~ 37214223 (+) True XLOC_003626

Expression Profile

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