XLOC_003591 (mst1rb)


Basic Information

Item Value
gene id XLOC_003591
gene name mst1rb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 35196587 ~ 35238756 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007010
GATGTCTTCACTGATGGACGCCTGCTGGAGGTAACCACAACACACTACAGCCATTTGCTTCACCCTGGAGTGGACATGGTCCATTGGGCCACACATTTAGTGACATGTGTCTGGATACAGGCTCTAATGTCTTCCGCATTGGACACTTGTCCCCCAACGGCCCCTATTTCTGTGGACTTCTCAGTGCCATATCCCATGCCTTACTATCAGACTCGCAACCCCATCCAGAACATAGTGACCAACTCCTTTTACAAAGAGGTCTACGTGGCCTCTCAGAACATTATTGAGGCACTTAACAACTCTTTGGATAAACTCTGGGAGCTCCGTACGGGACCCGTGGGCAGCCCGGAGTGTGAGATATGCGATTTGTGTGATATTGATAGAGATCCTTTTCATGAGGACACAGACAATGAGGTATTGCTCCTTGACACGTTCTTGATGTACTTGTACTCGTGTGGAAGTACCCAATATGGGGTTTGCTATTTCCATCAGCTCCGCGAGAATGGAAATCCTCCGGGGCCTTCGAAGTGTTTATTCCGGAAGAAGTTCAACTCTCCGCAGTTTTGTCCGGATTGTATAGCTAGTCCCTTCGGAACAAAAGTCTCCATGGTGGAGGAGGGTCAAACGGTGTACTTTTTTGTGGCGGCGACGGTGAATAATAGTGTGACTCAGAAATATGGACGCATGTCCATTTCTGTACGCCGACCAGTCGCGACGGAGGATGGTTTTTACACTGATGTCAGAGGACTGACAGTGTTGCCTGCTCTACAGCAGACATATGGCATTGAGTACGTCTACAGCTTTTACACACAGGACTTTGTCTACTTCTTGTCCGTCCAGCGAGAGAAAACAAATTTGGACTCTTCACCCTTTCAGACAAGACTCGGCCGTCTGCCACGTCATGAATGGGAGATGCGGCGTTATCGTGAAATTGTTTTAGAGTGTCGCTTCGAGCCCAAAAGGCGAAGGAGAAGCAATGTCAGCGAACCCTTTAAAGATGTGGTCTACAATGTAGTTCAAGCAGCCCACTTTGGCAAGGCCGGACGGGAGCTTGCAGATGAGCTGGGTGCTGAAGAAGAGGATGATATCTTGTATGGCGTGTTTGCTGTAACTGATGACTCAGGTGTTCCTGAACATGATTCAGCACTTTGTGCATTTCCGATGGATACAGTAAACACGGCAATAGACGATGGAGTGGAGGACTGCTGCAAGTCAGGACCAGAGCAGCTTTCCAGAGGCCTTTGCCATTTTCAGCCGTGTGAAAGCTGCCCACATGAGAGCATGGAGCACAACATGACATGCAGAGATCATCCCACGCTGGTGGCTCAGCCGTACTACAGAGTCGACCTGTTCAACAGACAGATGAGAGGAGTCCTGCTCACCTCATTGCTAGTCACCAGCATCGAGAACAAGACAGTGGCTCATATAGGCACCTCAGACGGGAGACTGCTGCAGCTCGTCCTGAGAAGGTCCAGCCCCATTATCTTTGCTAATTACTCACTTGTAGAGAACCAGAAAGTGTCGTCTACTGCAGCAGTTCTCTCTCAAAACCATCTACTGTTTGTGGTTGGAGATAAGATGATTCGGGTTCCTCAGAGGGGTCCAGGATGTCGGCACTTCCTAACATGTGCCATGTGCTTGACTGCACCCAAGTTTATGGGATGTGGCTGGTGCTCGGGTCAGTGCACATGGGCTTCTGAGTGCAGGGCACACTGGGTAAATGAATCGTGTCCACCTGTCATCACAGAGTTTTTCCCCAAGACAGCTCCCCCTGATGGTCAGAGTGAGTTGACTCTGTGTGGATGGGAGTTTCAGTCACCTCTTCGACCCGCCATCTCCACCAGAACTCACGAGGTGAAGCTGGGTGAAACCGCCTGTGTGGTCCAGCCACACAAAAGCAACTGCACACACTTGTTGTGTAAGATCCGCTCTGGAACAACAGAGACACTTTTTAAGCCACTGAACGTCACAGCTAAAGTGCATGAGGGTCAGGTTCCAAACATCACTGAGGTTCAGCCAGACTATGGGCCAGTGGACGGAGGGACTCTTATCACCATCACAGGGCCTTATCTGGATTCTGGGAAGAACAGGAAAGTCACTCTTGATGGAGAATCATGTCCAGTTCAAAGTGTATCTGTGGCCAGAGGAAACCTGTCCTCCATCGTGTGTCTCTCTCAGCCCGTGACAGAGGTGAAAGATGTGGTGCTGCGTGTCTACATCGATAAGTCCCGTGTCATGACCACTAAAGTCTTCCGCTACAAAAAGACTCCAGAAATTCTTGCAGTGCTGCCCGACTGCAGCTTTGACAGTGGGTCACGGATCATAATTGAAGGCCGGAATCTGGACTCCGTCTACAGAACTGTGGTCTACTTTAAGCCAAAAGAAAGCCACCTCAAACCGGTTTCCACTGAGTGCAGAGGTAAAGCCAAGCCCACCCGTATGGAGTGCATCACCCCTGTCTTCCCTCGAGATGAGACAGAAGAGGGCGAGCTTTCGTTTGATATGGACGGAGTGCTTGGTCTCTGGAAACATGACTTCTCCTATCACCCCTATGGCAAACCCATCCCATTCGAGACTGAAGGGCACATACTGAGACTCTACCCAGGCTTTGATGAAGTGTCCTTACATCACCAGAAGTTGAACCTTGTGAGTTCCTGCATGTCAATCACGATGACGGTGGGCGACGTTGACTGTGGTGGTAAAGTTTTGGATAATGAGATCACATGCAGGATCCCTAATAATCTCACCATTCCCAGTGAGGGTTTACCTGTAAAGGTAACGGTGAATGGGTACACGCATAATGTCGGCACTGTTATCTTGGTCAGTAACCACTATATGGTGGGCATTGTGCTCGGCATACTGGCAGCTCTAGTGACGGGTGCAGTTCTGGCCTTCATTGTGCTGAAAAACCTGAGGAAACAGAAAAAAGcTTCGCAGACAGAAAATCGGCTCTCTTATTTTTCCCACAGTCGCTCACGAAATAATAGCGTGGATTTGAGTTCCTTAGTAGACTACAGACGGGATCTGCCTCTCACCAGCATCACTGCACCCACTGGGGCCGTGGCATTCCCGGGCCTGGCCTACACAGGCACCCTAGACACCACCCTGACTCCTCTCATGCCCCCAGAGAAGATCTCTATCACCAGCTTCCGCCCTGAGCTGCTGGAGGAGGTGAAGGACGTGCTGATTCCAGCCTCCACACTCAAAGTTCACCACCACCAGATCATCGGAAAAGgACACTTTGGGACAGTTTACCACGGTTACCTCACTGACCACAACAACCGAGAAATCCACTGTGCTGTGAAGTCTCTTAACAGAATAACAGATGTGGAAGAGGTGGAGCAGTTTCTAAAAGAGGGCATCCTGATGAAGGGCTTTCATCACAGTAATGTTCTCTCTTTGCTGGGCATTCTGCTCCCAGAAGAGGGACTTCCTTTGGTGGTCTTACCTTATATGAAACACGGAGACTTGCGTCACTTCATTCGCTGTGAGAATAGGAATCCCACAGTTAAGGATTTAATAGGCTTCGGGCTTCAAGTTGCTAAAGGAATGGAGTATCTGGCACAAAAGAAGTTCGTACACCGGGATCTGGCAGCACGCAATTGCATGCTTGATGAATCCTACACAGTAAAGGTTGCAGATTTTGGCATGGCCCGAGATGTGCTGGAGAAGGAGTACTACAGCGTCCAGGATCACAGGAAAGCCAAATTACCCGTCAAATGGATGGCCATCGAAAGCCTTCAGACGCAGAAGTTCACCACCAAGTCAGATGTGTGGTCTTTTGGGGTTTTAATGTGGGAGATGCTAACAAGAGGAGCCAGTCCATATCCTGAAGTCGACCCATACGATGTTACTCATTACCTCCTGAAGGGACGACGACTGCCTCAACCACAGTATTGTCCAGATCCACTGTTTGCCATTATGCTTCAGTGCTGGGACCCTGACCCTGAGAAGAGGCCGAGCTTCTCCACACTTGTGTCTGCAGTGATGAGTATTCTGTCCAGTCTTGAGGGAGAGCACTACATCAGCCTGAAGGTGACATACGTCAACCTGGACCAACCCCGTCCTTACCCTGCCCTAACAGACTCTGCCGATGAATACGATTCGTCAGATGACAATGAACCAGGCTCAGTATCAAGC
>TCONS_00007011
ATGGTCCATTGGGCCACACATTTAGTGACATGTGTCTGGATACAGGCTCTAATGTCTTCCGCATTGGACACTTGTCCCCCAACGGCCCCTATTTCTGTGGACTTCTCAGTGCCATATCCCATGCCTTACTATCAGACTCGCAACCCCATCCAGAACATAGTGACCAACTCCTTTTACAAAGAGGTCTACGTGGCCTCTCAGAACATTATTGAGGCACTTAACAACTCTTTGGATAAACTCTGGGAGCTCCGTACGGGACCCGTGGGCAGCCCGGAGTGTGAGATATGCGATTTGTGTGATATTGATAGAGATCCTTTTCATGAGGACACAGACAATGAGGTATTGCTCCTTGACACGTTCTTGATGTACTTGTACTCGTGTGGAAGTACCCAATATGGGGTTTGCTATTTCCATCAGCTCCGCGAGAATGGAAATCCTCCGGGGCCTTCGAAGTGTTTATTCCGGAAGAAGTTCAACTCTCCGCAGTTTTGTCCGGATTGTATAGCTAGTCCCTTCGGAACAAAAGTCTCCATGGTGGAGGAGGGTCAAACGGTGTACTTTTTTGTGGCGGCGACGGTGAATAATAGTGTGACTCAGAAATATGGACGCATGTCCATTTCTGTACGCCGACCAGTCGCGACGGAGGATGGTTTTTACACTGATGTCAGAGGACTGACAGTGTTGCCTGCTCTACAGCAGACATATGGCATTGAGTACGTCTACAGCTTTTACACACAGGACTTTGTCTACTTCTTGTCCGTCCAGCGAGAGAAAACAAATTTGGACTCTTCACCCTTTCAGACAAGACTCGGCCGTCTGCCACGTCATGAATGGGAGATGCGGCGTTATCGTGAAATTGTTTTAGAGTGTCGCTTCGAGCCCAAAAGGCGAAGGAGAAGCAATGTCAGCGAACCCTTTAAAGATGTGGTCTACAATGTAGTTCAAGCAGCCCACTTTGGCAAGGCCGGACGGGAGCTTGCAGATGAGCTGGGTGCTGAAGAAGAGGATGATATCTTGTATGGCGTGTTTGCTGTAACTGATGACTCAGGTGTTCCTGAACATGATTCAGCACTTTGTGCATTTCCGATGGATACAGTAAACACGGCAATAGACGATGGAGTGGAGGACTGCTGCAAGTCAGGACCAGAGCAGCTTTCCAGAGGCCTTTGCCATTTTCAGCCGTGTGAAAGCTGCCCACATGAGAGCATGGAGCACAACATGACATGCAGAGATCATCCCACGCTGGTGGCTCAGCCGTACTACAGAGTCGACCTGTTCAACAGACAGATGAGAGGAGTCCTGCTCACCTCATTGCTAGTCACCAGCATCGAGAACAAGACAGTGGCTCATATAGGCACCTCAGACGGGAGACTGCTGCAGCTCGTCCTGAGAAGGTCCAGCCCCATTATCTTTGCTAATTACTCACTTGTAGAGAACCAGAAAGTGTCGTCTACTGCAGCAGTTCTCTCTCAAAACCATCTACTGTTTGTGGTTGGAGATAAGATGATTCGGGTTCCTCAGAGGGGTCCAGGATGTCGGCACTTCCTAACATGTGCCATGTGCTTGACTGCACCCAAGTTTATGGGATGTGGCTGGTGCTCGGGTCAGTGCACATGGGCTTCTGAGTGCAGGGCACACTGGGTAAATGAATCGTGTCCACCTGTCATCACAGAGTTTTTCCCCAAGACAGCTCCCCCTGATGGTCAGAGTGAGTTGACTCTGTGTGGATGGGAGTTTCAGTCACCTCTTCGACCCGCCATCTCCACCAGAACTCACGAGGTGAAGCTGGGTGAAACCGCCTGTGTGGTCCAGCCACACAAAAGCAACTGCACACACTTGTTGTGTAAGATCCGCTCTGGAACAACAGAGACACTTTTTAAGCCACTGAACGTCACAGCTAAAGTGCATGAGGGTCAGGTGGAGGGCCACTACTCTATTGACGGAAGTGCTGAGATGCCTGGATTCACCTTTGTGGTTCCAAACATCACTGAGGTTCAGCCAGACTATGGGCCAGTGGACGGAGGGACTCTTATCACCATCACAGGGCCTTATCTGGATTCTGGGAAGAACAGGAAAGTCACTCTTGATGGAGAATCATGTCCAGTTCAAAGAGGAAACCTGTCCTCCATCGTGTGTCTCTCTCAGCCCGTGACAGAGGTGAAAGATGTGGTGCTGCGTGTCTACATCGATAAGTCCCGTGTCATGACCACTAAAGTCTTCCGCTACAAAAAGACTCCAGAAATTCTTGCAGTGCTGCCCGACTGCAGCTTTGACAGTGGGTCACGGATCATAATTGAAGGCCGGAATCTGGACTCCGTCTACAGAACTGTGGTCTACTTTAAGCCAAAAGAAAGCCACCTCAAACCGGTTTCCACTGAGTGCAGAGGTAAAGCCAAGCCCACCCGTATGGAGTGCATCACCCCTGTCTTCCCTCGAGATGAGACAGAAGAGGGCGAGCTTTCGTTTGATATGGACGGAGTGCTTGGTCTCTGGAAACATGACTTCTCCTATCACCCCTATGGCAAACCCATCCCATTCGAGACTGAAGGGCACATACTGAGACTCTACCCAGGCTTTGATGAAGTGTCCTTACATCACCAGAAGTTGAACCTTGTGAGTTCCTGCATGTCAATCACGATGACGGTGGGCGACGTTGACTGTGGTGGTAAAGTTTTGGATAATGAGATCACATGCAGGATCCCTAATAATCTCACCATTCCCAGTGAGGGTTTACCTGTAAAGGTAACGGTGAATGGGTACACGCATAATGTCGGCACTGTTATCTTGGTCAGTAACCACTATATGGTGGGCATTGTGCTCGGCATACTGGCAGCTCTAGTGACGGGTGCAGTTCTGGCCTTCATTGTGCTGAAAAACCTGAGGAAACAGAAAAAAGcTTCGCAGACAGAAAATCGGCTCTCTTATTTTTCCCACAGTCGCTCACGAAATAATAGCGTGGATTTGAGTTCCTTAGTAGACTACAGACGGGGTGAGAAATACATTATCAGATATCTGCCTCTCACCAGCATCACTGCACCCACTGGGGCCGTGGCATTCCCGGGCCTGGCCTACACAGGCACCCTAGACACCACCCTGACTCCTCTCATGCCCCCAGAGAAGATCTCTATCACCAGCTTCCGCCCTGAGCTGCTGGAGGAGGTGAAGGACGTGCTGATTCCAGCCTCCACACTCAAAGTTCACCACCACCAGATCATCGGAAAAGgACACTTTGGGACAGTTTACCACGGTTACCTCACTGACCACAACAACCGAGAAATCCACTGTGCTGTGAAGTCTCTTAACAGAATAACAGATGTGGAAGAGGTGGAGCAGTTTCTAAAAGAGGGCATCCTGATGAAGGGCTTTCATCACAGTAATGTTCTCTCTTTGCTGGGCATTCTGCTCCCAGAAGAGGGACTTCCTTTGGTGGTCTTACCTTATATGAAACACGGAGACTTGCGTCACTTCATTCGCTGTGAGAATAGGAATCCCACAGTTAAGGATTTAATAGGCTTCGGGCTTCAAGTTGCTAAAGGAATGGAGTATCTGGCACAAAAGAAGTTCGTACACCGGGATCTGGCAGCACGCAATTGCATGCTTGATGAATCCTACACAGTAAAGGTTGCAGATTTTGGCATGGCCCGAGATGTGCTGGAGAAGGAGTACTACAGCGTCCAGGATCACAGGAAAGCCAAATTACCCGTCAAATGGATGGCCATCGAAAGCCTTCAGACGCAGAAGTTCACCACCAAGTCAGATGTGTGGTCTTTTGGGGTTTTAATGTGGGAGATGCTAACAAGAGGAGCCAGTCCATATCCTGAAGTCGACCCATACGATGTTACTCATTACCTCCTGAAGGGACGACGACTGCCTCAACCACAGTATTGTCCAGATCCACTGTTTGCCATTATGCTTCAGTGCTGGGACCCTGACCCTGAGAAGAGGCCGAGCTTCTCCACACTTGTGTCTGCAGTGATGAGTATTCTGTCCAGTCTTGAGGGAGAGCACTACATCAGCCTGAAGGTGACATACGTCAACCTGGACCAACCCCGTCCTTACCCTGCCCTAACAGACTCTGCCGATGAATACGATTCGTCAGATGACAATGAACCAGGCTCAGTATCAAGCTGA

Function

symbol description
mst1rb Predicted to enable transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within bone mineralization. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in basal plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in corpuscles of Stannius and pronephros. Human ortholog(s) of this gene implicated in nasopharynx carcinoma. Orthologous to human MST1R (macrophage stimulating 1 receptor).

GO:

id name namespace
GO:0006909 phagocytosis biological_process
GO:0033674 positive regulation of kinase activity biological_process
GO:0016477 cell migration biological_process
GO:0007275 multicellular organism development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0030282 bone mineralization biological_process
GO:0051897 positive regulation of protein kinase B signaling biological_process
GO:0007399 nervous system development biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0009925 basal plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071218-3 Predicted to enable transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within bone mineralization. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in basal plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in corpuscles of Stannius and pronephros. Human ortholog(s) of this gene implicated in nasopharynx carcinoma. Orthologous to human MST1R (macrophage stimulating 1 receptor).

Ensembl:

ensembl_id ENSDARG00000004871

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007010 False 4140 mRNA 0.50 20 35196587 35238753
TCONS_00007011 True 4131 mRNA 0.50 20 35196662 35238756

Neighbor

gene id symbol gene type direction distance location
XLOC_003590 NA coding upstream 2049 35189723 ~ 35194538 (+)
XLOC_003589 mon1a coding upstream 11530 35171406 ~ 35185057 (+)
XLOC_003588 CT963136.1 coding upstream 102865 35093605 ~ 35093722 (+)
XLOC_003587 inka1a coding upstream 139980 35048642 ~ 35056607 (+)
XLOC_003586 gnai2a coding upstream 154393 34921492 ~ 35042194 (+)
XLOC_003592 NA coding downstream 60087 35298843 ~ 35315234 (+)
XLOC_003593 camkvb coding downstream 125689 35364445 ~ 35441348 (+)
XLOC_003594 CR933559.1 coding downstream 813975 36052731 ~ 36146847 (+)
XLOC_003595 grm2b coding downstream 919378 36158134 ~ 36216651 (+)
XLOC_003596 GPR62 coding downstream 992492 36231248 ~ 36237676 (+)
XLOC_003369 CR854846.2 misc upstream 19073505 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 22484591 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 22502324 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 22510988 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 22516559 12679732 ~ 12680028 (+)
XLOC_003583 NA non-coding upstream 635848 34551024 ~ 34560739 (+)
XLOC_003581 NA non-coding upstream 793780 34397567 ~ 34402807 (+)
XLOC_003579 NA non-coding upstream 1346298 33844208 ~ 33850289 (+)
XLOC_003602 CU928222.1 non-coding downstream 1255338 36494094 ~ 36500806 (+)
XLOC_003603 CU928222.3 non-coding downstream 1266918 36505674 ~ 36515323 (+)
XLOC_003604 CU928222.2 non-coding downstream 1281215 36519971 ~ 36528422 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_08388107_08410565 MST1R, MST1RB coding CI01000306 null 8387407 ~ 8411763 (+)